Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01071 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGCGGTGCCAATTTTGTCACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATTTTCAATCAGGTGGGCCAGGTAGTTTCGGTCCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGCTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTGATGTATTCTCATCGTGACCCAAGCATTCGCAAGAGTGGGGCTGGAAATATATTCATCAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCTGAAAGCTATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACTACTACTGAAGAGGATTTGAACAAAGCTTTTTCTGAATTTGGGACACTCACGAGTATTGTTGTGATGAGGGATGCTGATGGAAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCCGATGATGCTGCTAGGGCAGTTGATGCCCTTAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGAAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAAGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGCATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGATGAGGCATCTAGAGCTCTTGTGGAGATGAATGGAAAAATGGTTGTTAGTAAACCATTATATGTAGCACTTGCACAGCGGAAGGAAGATAGGAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGTCAGTTCCCATGCCTGCTTCAGTTGCCCCTCGGATGCCAATATATCCCCCTGGTGGACCAGGTATCGGACAGCAGTTGTTTTATGGTCAAGCTCCTCCTGCAATGATTCCTTCCCAAGGTGGGTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTCCCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGGGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCTGGAAGAGGATTGCCTGATGTTGCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCAGCACACTCTCAACCTATTCCTATTGGTGCACTGGCTTCTGCTCTGGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTGGAGCCTGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCGGAAGCTTTGAAGGCGAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCAGCAGCTCAGCAGCAGCAGCAAGCTGGCAATGCAGCAGATCAGCTAGCTTCTCTGTCGCTGACGGAGAACCTCGTGTCGTGA 1965 46.46 MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYPPGGPGIGQQLFYGQAPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQQAGNAADQLASLSLTENLVS* 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8732649 8737314 + Chy6G115990.1 Chy06g01071 228780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01071 654 Gene3D - 548 632 - -
Chy06g01071 654 Gene3D - 1 118 IPR012677 -
Chy06g01071 654 Gene3D - 199 293 IPR012677 -
Chy06g01071 654 CDD RRM1_I_PABPs 30 109 - -
Chy06g01071 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Chy06g01071 654 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Chy06g01071 654 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Chy06g01071 654 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
Chy06g01071 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Chy06g01071 654 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Chy06g01071 654 MobiDBLite consensus disorder prediction 473 494 - -
Chy06g01071 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Chy06g01071 654 Gene3D - 294 396 IPR012677 -
Chy06g01071 654 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Chy06g01071 654 SUPERFAMILY PABC (PABP) domain 495 638 IPR036053 GO:0003723
Chy06g01071 654 PANTHER RNA BINDING PROTEIN 18 634 - -
Chy06g01071 654 CDD RRM4_I_PABPs 310 388 - -
Chy06g01071 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Chy06g01071 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Chy06g01071 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Chy06g01071 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Chy06g01071 654 SMART rrm1_1 30 103 IPR000504 GO:0003723
Chy06g01071 654 SMART rrm1_1 312 384 IPR000504 GO:0003723
Chy06g01071 654 SMART rrm1_1 209 281 IPR000504 GO:0003723
Chy06g01071 654 SMART rrm1_1 118 190 IPR000504 GO:0003723
Chy06g01071 654 CDD RRM2_I_PABPs 115 191 IPR045305 -
Chy06g01071 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Chy06g01071 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Chy06g01071 654 SMART poly_2 564 627 IPR002004 GO:0003723
Chy06g01071 654 SMART rrm2_1 209 281 IPR003954 GO:0003676
Chy06g01071 654 SMART rrm2_1 30 103 IPR003954 GO:0003676
Chy06g01071 654 SMART rrm2_1 312 384 IPR003954 GO:0003676
Chy06g01071 654 SMART rrm2_1 118 190 IPR003954 GO:0003676
Chy06g01071 654 Gene3D - 119 198 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00475 Chy-Chr3:6640587 Chy06g01071 Chy-Chr6:8732649 0 dispersed
Chy04g02000 Chy-Chr4:25800912 Chy06g01071 Chy-Chr6:8732649 1.22E-16 dispersed
Chy04g02001 Chy-Chr4:25802223 Chy06g01071 Chy-Chr6:8732649 7.93E-21 dispersed
Chy06g01071 Chy-Chr6:8732649 Chy07g00112 Chy-Chr7:986775 1.53E-16 dispersed
Chy11g01926 Chy-Chr11:25379736 Chy06g01071 Chy-Chr6:8732649 2.57E-08 dispersed
Chy01g01605 Chy-Chr1:21992958 Chy06g01071 Chy-Chr6:8732649 4.19E-07 transposed
Chy02g01015 Chy-Chr2:6848660 Chy06g01071 Chy-Chr6:8732649 2.34E-14 transposed
Chy07g00949 Chy-Chr7:13939892 Chy06g01071 Chy-Chr6:8732649 9.29E-09 transposed
Chy06g00827 Chy-Chr6:5834511 Chy06g01071 Chy-Chr6:8732649 7.75E-07 transposed
Chy01g00064 Chy-Chr1:474595 Chy06g01071 Chy-Chr6:8732649 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01071 K13126 - csv:101219802 1225.69