Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01075 ATGCCTGGGACTGGGAGTGTTGCTGTTCAACCTTTGGATTTGAGCCTACACATTCCATACCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGCGATCCTGTTACCGTCAGCACCGGTCAGACTTACGACCGTTCAAGTATTGAGTCATGGGTTGCCACCGGAAACACTACCTGTCCGGTTACTCGGGCTCCACTCACCGACTTCACCCTCATCCCTAACCATACTCTTCGCCGGTTAATCCAGGAGTGGTGTGTTGCCAATCGGTCTTATGGTGTTGAGCGGATTCCCACTCCCAAGCAGCCGGCGGAACCTTCTTTGGTTAGGTCTTTGCTTGGTCAAGCTTCGTCGAGATCGAGTGGTTCAAGTTTGAGAATCTCGGCTTTGCGTAGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAATGCTCGTGAAATTCTTCTGGATGTTGTGTTTTCCAATTTGGATTCGGGTTCGGATTCGTTTTCACCTGATTTGAGCCGTGAATCGCTTGCTCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGTGTTCTTGTTGCGTCTGATCCACAACGGATTGGTTATCTTTCACATCTTCTCTTTGATTCTTCCATTGAAGTCCGAATCAATGCTGCCGCGTTGATTGAGACTGTAATTGCCGGAACTAGAGCGTCGGAGCTCCGAACCCAAATTTGTGGAATCGATGAATTGTTTGAAGGCGTGGTTGAAATTCTTAGAGATCCAACGGCGTATCCACGAGCACTCAAGGTCGGAGTTAAGGCTCTATTTGCTCTCTGTTTGGTGAAACAAACCAGGCATAAGGCAGTTTCCGCCGGCGCCGCTGAGATTATCATCGACCGATTTCCCGATTTGGAGAAGTACGATGCGGAGCGAGCCCTAGCTACGATTGAACTCGTTTGCAGAATTCCGACCGGTTGCGATGCGTTTGCAGCTCACGCCCTCACCGTTCCGCTTTTGGTGAAAGTCATTTTGAAGATCTCGGACAGAGCGACGGAGTCTGCTGTCGGAGCTTTGGTGTCGCTGTGTTCGGCGTCGGAGGAGAATCGGCGGGAGGCGGTGGCGGCGGGAATATTGACACAGTTGTTGTTGTTGGTGCAAAGTGATTGTACGGAGAGAGTTAAACGGAAATCGCAGGTGTTGCTGAAGCTTCTTCGAGATTCATGGCCGCAAGAGTCCGTTGGAAATTCGGACGATTATGCTTGCAGTGAAATTGTGGTACCATTTTGTTAA 1278 49.77 MPGTGSVAVQPLDLSLHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPAEPSLVRSLLGQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSGSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIETVIAGTRASELRTQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELVCRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPFC* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8808161 8809438 - Chy6G116030.1 Chy06g01075 228784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01075 425 SUPERFAMILY ARM repeat 107 400 IPR016024 -
Chy06g01075 425 SUPERFAMILY RING/U-box 16 93 - -
Chy06g01075 425 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842|GO:0016567
Chy06g01075 425 CDD RING-Ubox_PUB 22 63 IPR045210 -
Chy06g01075 425 SMART Ubox_2 21 84 IPR003613 GO:0004842|GO:0016567
Chy06g01075 425 PANTHER WDSAM1 PROTEIN 9 421 IPR045185 GO:0061630
Chy06g01075 425 Gene3D - 92 413 IPR011989 -
Chy06g01075 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Chy06g01075 425 Pfam U-box domain 18 89 IPR003613 GO:0004842|GO:0016567
Chy06g01075 425 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01606 Chy-Chr3:18012602 Chy06g01075 Chy-Chr6:8808161 1.04E-40 dispersed
Chy04g00146 Chy-Chr4:1320304 Chy06g01075 Chy-Chr6:8808161 1.26E-19 dispersed
Chy06g01075 Chy-Chr6:8808161 Chy06g01338 Chy-Chr6:12838302 1.88E-67 dispersed
Chy11g01952 Chy-Chr11:25559004 Chy06g01075 Chy-Chr6:8808161 1.32E-33 dispersed
Chy06g01075 Chy-Chr6:8808161 Chy05g00202 Chy-Chr5:1692654 3.18E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01075 - - csv:101219319 793.497