Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01095 ATGTCATTCCGAAGCATTGTTCGTGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCACTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAGGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTTGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGTCCAGAAATTTGTGGAAAGCTTACTTTCCCAGTGTCATTGAAGCAGCCAGGACCGCGTGATGGTTCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCGAAGCGTACACGAAGAACTACTAGCACGGAGTATATTATCTCAATGGATGCCGAAAACATTTCGAGATCAAGTAGCTCTTACATTGGAAAACTGAGGTCGAATTTTCTTGGAACAAAATTCATTGTTTATGATACTCAACCTCCGTACACTGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTTTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAATTAAATGTCTTAGGCACACGAGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTCGATGCCGGTGGCACTGTTCCAGGCCAACCCGAGCTCCTCCCTCCCAACTCCCTCGACGACTCATTCCGGAGTGCATCCTTCTCCAAAGCCATAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCTGAAATTGGGAGAGCCGCATTGGATGGTGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGTCTCAACTTTCGTGGGCGAGTAACCGTTGCATCAGTGAAGAACTTTCAGTTGATTGCAGCAATACAACCAGCTGCTGGCGCTCCAACCCCTTCTCAACCAGGCCCACCCGAGCATGACAAGATCATTCTTCAATTTGGGAAGGTTGGTAAAGACATGTTCACGATGGATTATCGATATCCGTTGTCTGCTTTTCAGGCCTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 45.84 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKAIDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9150966 9153138 - Chy6G116230.1 Chy06g01095 228804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01095 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Chy06g01095 428 PANTHER TUBBY-RELATED 1 428 - -
Chy06g01095 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Chy06g01095 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Chy06g01095 428 Pfam Tub family 115 423 IPR000007 -
Chy06g01095 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Chy06g01095 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Chy06g01095 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Chy06g01095 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Chy06g01095 428 Gene3D - 49 101 - -
Chy06g01095 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00507 Chy-Chr3:6981256 Chy06g01095 Chy-Chr6:9150966 0 dispersed
Chy06g01095 Chy-Chr6:9150966 Chy11g01469 Chy-Chr11:21443334 1.67E-150 dispersed
Chy06g01095 Chy-Chr6:9150966 Chy04g00489 Chy-Chr4:4705059 1.37E-151 transposed
Chy06g01095 Chy-Chr6:9150966 Chy06g00654 Chy-Chr6:4489235 5.33E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18165 PF01167 Tub 8.10E-117 CL0395 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01095 K19600 - csv:101216314 868.611