Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01095 ATGTCATTCCGAAGCATTGTTCGTGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCACTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAGGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTTGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGTCCAGAAATTTGTGGAAAGCTTACTTTCCCAGTGTCATTGAAGCAGCCAGGACCGCGTGATGGTTCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCGAAGCGTACACGAAGAACTACTAGCACGGAGTATATTATCTCAATGGATGCCGAAAACATTTCGAGATCAAGTAGCTCTTACATTGGAAAACTGAGGTCGAATTTTCTTGGAACAAAATTCATTGTTTATGATACTCAACCTCCGTACACTGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTTTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAATTAAATGTCTTAGGCACACGAGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTCGATGCCGGTGGCACTGTTCCAGGCCAACCCGAGCTCCTCCCTCCCAACTCCCTCGACGACTCATTCCGGAGTGCATCCTTCTCCAAAGCCATAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCTGAAATTGGGAGAGCCGCATTGGATGGTGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGTCTCAACTTTCGTGGGCGAGTAACCGTTGCATCAGTGAAGAACTTTCAGTTGATTGCAGCAATACAACCAGCTGCTGGCGCTCCAACCCCTTCTCAACCAGGCCCACCCGAGCATGACAAGATCATTCTTCAATTTGGGAAGGTTGGTAAAGACATGTTCACGATGGATTATCGATATCCGTTGTCTGCTTTTCAGGCCTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 45.84 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKAIDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9150966 9153138 - Chy6G116230.1 Chy06g01095 228804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01095 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Chy06g01095 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Chy06g01095 428 PANTHER TUBBY-RELATED 1 428 - -
Chy06g01095 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Chy06g01095 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Chy06g01095 428 Pfam Tub family 115 423 IPR000007 -
Chy06g01095 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Chy06g01095 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Chy06g01095 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Chy06g01095 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Chy06g01095 428 Gene3D - 49 101 - -
Chy06g01095 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01095 K19600 TUB, TULP; tubby and related proteins - csv:101216314 868.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00507 Chy-Chr3:6981256 Chy06g01095 Chy-Chr6:9150966 0 dispersed
Chy06g01095 Chy-Chr6:9150966 Chy11g01469 Chy-Chr11:21443334 1.67E-150 dispersed
Chy06g01095 Chy-Chr6:9150966 Chy04g00489 Chy-Chr4:4705059 1.37E-151 transposed
Chy06g01095 Chy-Chr6:9150966 Chy06g00654 Chy-Chr6:4489235 5.33E-152 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G76900 69.9 1.9e-169 592.4
Chy03g00507 . 1 433 TUB Transcription Factor Family AT1G76900 69.4 4.2e-169 591.3
Chy11g01469 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 50.9 7.8e-115 411.0
Chy06g00654 CCT,ECH 13 388 TUB Transcription Factor Family AT1G76900 51.3 1.6e-112 403.3
Chy02g00642 CCT,ECH 38 403 TUB Transcription Factor Family AT1G76900 51.9 1.3e-106 383.6
Chy03g00407 . 1 190 TUB Transcription Factor Family AT1G76900 77.3 5.6e-81 298.5
Chy06g01095 . 174 429 TUB Transcription Factor Family AT1G25280 74.3 5.8e-102 367.5
Chy03g00507 . 175 433 TUB Transcription Factor Family AT1G25280 70.4 2.2e-93 339.0
Chy07g01239 CCT,ECH 244 482 TUB Transcription Factor Family AT1G25280 56.8 4.1e-71 265.0
Chy06g00654 CCT,ECH 154 388 TUB Transcription Factor Family AT1G25280 53.7 9.1e-71 263.8
Chy04g00489 . 180 412 TUB Transcription Factor Family AT1G25280 54.7 2.5e-68 255.8
Chy11g01469 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.0 7.9e-67 250.8
Chy02g00642 CCT,ECH 164 403 TUB Transcription Factor Family AT1G25280 51.7 8.8e-66 247.3
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.9 1.9e-98 355.9
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT5G18680 64.0 4.3e-98 354.8
Chy03g00507 . 112 433 TUB Transcription Factor Family AT5G18680 52.9 1.8e-83 306.2
Chy06g01095 . 113 429 TUB Transcription Factor Family AT5G18680 53.0 8.8e-83 303.9
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT5G18680 53.8 3.5e-79 292.0
Chy07g01239 CCT,ECH 39 481 TUB Transcription Factor Family AT2G18280 58.1 1.0e-139 493.4
Chy02g00642 CCT,ECH 7 402 TUB Transcription Factor Family AT2G18280 61.7 1.7e-134 476.1
Chy04g00489 . 1 411 TUB Transcription Factor Family AT2G18280 60.0 1.5e-125 446.4
Chy06g01095 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 2.7e-119 425.6
Chy06g00654 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.1 1.0e-115 413.7
Chy03g00507 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Chy11g01469 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.2 2.4e-112 402.5
Chy07g00990 . 50 381 TUB Transcription Factor Family AT2G18280 50.4 1.5e-93 340.1
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G18280 53.1 6.4e-49 191.8
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT2G47900 68.3 7.1e-160 560.5
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.3 1.3e-158 556.2
Chy06g01095 . 1 429 TUB Transcription Factor Family AT2G47900 56.7 6.9e-131 464.2
Chy03g00507 . 1 433 TUB Transcription Factor Family AT2G47900 56.5 9.1e-131 463.8
Chy07g01239 CCT,ECH 39 482 TUB Transcription Factor Family AT2G47900 52.3 2.3e-118 422.5
Chy04g00489 . 10 412 TUB Transcription Factor Family AT2G47900 55.5 1.5e-117 419.9
Chy02g00642 CCT,ECH 10 403 TUB Transcription Factor Family AT2G47900 52.5 1.4e-110 396.7
Chy07g00990 . 51 381 TUB Transcription Factor Family AT2G47900 51.5 1.6e-98 356.7
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G47900 56.0 2.1e-58 223.4
Chy01g01931 . 84 299 TUB Transcription Factor Family AT1G16070 62.7 1.5e-74 276.6
Chy06g01095 . 66 429 TUB Transcription Factor Family AT1G43640 68.1 4.7e-147 517.7
Chy03g00507 . 65 433 TUB Transcription Factor Family AT1G43640 65.9 1.0e-141 500.0
Chy11g01469 CCT,ECH 47 387 TUB Transcription Factor Family AT1G43640 52.1 6.9e-106 380.9
Chy06g00654 CCT,ECH 49 388 TUB Transcription Factor Family AT1G43640 53.6 1.2e-105 380.2
Chy04g00489 . 69 412 TUB Transcription Factor Family AT1G43640 50.7 1.6e-99 359.8
Chy02g00642 CCT,ECH 55 403 TUB Transcription Factor Family AT1G43640 50.4 1.2e-94 343.6
Chy03g00407 . 67 190 TUB Transcription Factor Family AT1G43640 79.8 5.5e-55 211.8
Chy04g00489 . 34 412 TUB Transcription Factor Family AT1G47270 64.6 2.2e-134 475.7
Chy02g00642 CCT,ECH 21 403 TUB Transcription Factor Family AT1G47270 57.0 1.1e-120 430.3
Chy07g01239 CCT,ECH 72 482 TUB Transcription Factor Family AT1G47270 54.4 1.3e-118 423.3
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G47270 52.2 1.1e-114 410.2
Chy03g00507 . 48 433 TUB Transcription Factor Family AT1G47270 53.5 6.9e-112 401.0
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.9 1.0e-107 387.1
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT1G47270 50.4 4.0e-104 375.2
Chy03g00407 . 30 190 TUB Transcription Factor Family AT1G47270 54.2 1.7e-46 183.7
Chy07g00990 . 1 381 TUB Transcription Factor Family AT1G53320 71.4 3.2e-154 541.6
Chy11g01469 CCT,ECH 22 387 TUB Transcription Factor Family AT1G53320 50.8 2.0e-103 372.9
Chy06g00654 CCT,ECH 22 388 TUB Transcription Factor Family AT1G53320 50.3 1.9e-98 356.3
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT3G06380 64.4 1.8e-96 349.4
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 62.6 3.3e-95 345.1
Chy06g01095 . 117 429 TUB Transcription Factor Family AT3G06380 54.0 4.2e-82 301.6
Chy03g00507 . 116 433 TUB Transcription Factor Family AT3G06380 52.8 1.8e-80 296.2
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT3G06380 53.4 8.8e-80 293.9
Chy04g00489 . 120 412 TUB Transcription Factor Family AT3G06380 53.2 1.7e-78 289.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18165 PF01167 Tub 8.10E-117 CL0395 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01095 Chy_Chr06 FPKM 22.650558 23.179333 32.246185 35.587086 22.243546 20.764862 24.216488 33.540318 34.220467 38.366352