Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01131 ATGGATCATCTCTCCCATGAGCTCAAGATACAGATTTTATTAATAAGGTGGTGGCAGTCGTTCATGGTTGTTTTGGTTTCTTACTCGGTGTGGGTTTACCCATTGGAAGTGGCGTTTCTTGACGCAATTCCCAGGCGAAAATTATTAATTGTTGATACTGTTGTCGATCTCTTCTTCGCCATTGATATTGTCTTCACCTTCTTCATTGCTTACATTGATCATCGCACTCAGCTTCTCGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGATACACTGGCCTATCTGTCCACAGGCAAATATGATCTTTGTCTCCCTTTTGCCCTCCTAGGATTGCTAAGATTTTGGCGATTGCGACGTGTCAAGCAATTTTTTACCAGGCTTGAGAAAGACATTAGATTCAGCTACTTTTGGGTTAGATGTGCTAGGCTCCTATCTGTCACTTTATTTTATGTCCACTGTGCCGGATGCGTCTACTACTTATTGGCTGACCGATATCCACATGAAGGGAAAACCTGGATTGGAACCTTATTTCCAAATTTCAAAGAGATTAGCTTTGGAGTGAGATATACTTCAGCCATGTATTGGTCTATCACCACAATGACAACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCGTGGAAATGATCTTTATCATTTTCTACATGCTTTTCAATCTGGGGCTTACAGCTTACTTGATCGGTAACATGACAAACTTAGTTGTTGAAGGAACTCGCCGCACAATGGAATTTAGAAACAGCATTGAAATGGCATCGAACTTCGTTAACCGGAATCGCCTGCCTTCGAGGTTGAAGGAACACATATTGGCATACATGTGCTTGAGATTCAAGGCTGAGAGCCTAAACCAACAGCATCTGATTGAACAGCTTCCAAAGTCAATTTGCAAAAGCATATGTCAGCAATTGTTTTTGCCGACCGTGGAGAAAGTCTACCTCTTCAAGGGTGTTTCAAAGGAAACACTTGTAGTGCTGGTAGCGAAGATGAAAGCCGAGTATATACCGCCTAAGGAGGACGTGATAATACAAAATGACACTCCTGATGAAGTTTATATCATTGTGTCTGGGGAAATTGAAATTATTGACTGTGAGATGGATGTGGAACGGATTGTTGGAACGCTACACTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAATTTTACATACAGAACCAGAACTCTTTCACAGCTCTTGAAGCTGAAAACAAGTGTATTACAGGAAGCTATGAATTTCAAACAAGAAGACAGTATGGTCATTGTCAAGAACTTCCTTCAGGAGCGTGAGCTCAGCCACAAAATCACCATAGAAGGCTCACCCGAAAAAGAGGTGCCGACGCTGATCGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCATTGAATTAGATTTTGCTAGAGTGAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTTATCAGATTGCCACATTCAATGGAGGAGCTCAAAAAACTTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCTATTGATGTGATAAGGGATAATGATAAGATTTTTTTTTCATAG 1701 40.86 MDHLSHELKIQILLIRWWQSFMVVLVSYSVWVYPLEVAFLDAIPRRKLLIVDTVVDLFFAIDIVFTFFIAYIDHRTQLLVRDSKKIAIRYLSTWFLMDLASTIPFDTLAYLSTGKYDLCLPFALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCVYYLLADRYPHEGKTWIGTLFPNFKEISFGVRYTSAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRLKEHILAYMCLRFKAESLNQQHLIEQLPKSICKSICQQLFLPTVEKVYLFKGVSKETLVVLVAKMKAEYIPPKEDVIIQNDTPDEVYIIVSGEIEIIDCEMDVERIVGTLHCGSMFGEVGALCCKNQNFTYRTRTLSQLLKLKTSVLQEAMNFKQEDSMVIVKNFLQERELSHKITIEGSPEKEVPTLIEEKDQSFNWKHSIELDFARVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKKLAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKIFFS* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9811722 9818312 + Chy6G116590.1 Chy06g01131 228840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01131 566 SMART cnmp_10 335 452 IPR000595 -
Chy06g01131 566 ProSiteProfiles KHA domain profile. 494 566 IPR021789 -
Chy06g01131 566 PANTHER POTASSIUM CHANNEL AKT2/3 489 565 - -
Chy06g01131 566 PANTHER POTASSIUM CHANNEL AKT2/3 16 461 - -
Chy06g01131 566 Pfam Ion transport protein 16 264 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy06g01131 566 ProSiteProfiles cAMP/cGMP binding motif profile. 335 454 IPR000595 -
Chy06g01131 566 Gene3D Jelly Rolls 302 471 IPR014710 -
Chy06g01131 566 Gene3D - 17 258 - -
Chy06g01131 566 PANTHER POTASSIUM CHANNEL AKT1 489 565 IPR045319 GO:0005249|GO:0006813
Chy06g01131 566 PANTHER POTASSIUM CHANNEL AKT1 16 461 IPR045319 GO:0005249|GO:0006813
Chy06g01131 566 PRINTS EAG/ELK/ERG potassium channel family signature 63 72 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy06g01131 566 PRINTS EAG/ELK/ERG potassium channel family signature 205 222 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy06g01131 566 PRINTS EAG/ELK/ERG potassium channel family signature 52 62 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy06g01131 566 PRINTS EAG/ELK/ERG potassium channel family signature 249 258 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy06g01131 566 PRINTS EAG/ELK/ERG potassium channel family signature 231 242 IPR003938 GO:0005249|GO:0006813|GO:0016020
Chy06g01131 566 Pfam KHA, dimerisation domain of potassium ion channel 494 565 IPR021789 -
Chy06g01131 566 Pfam Cyclic nucleotide-binding domain 356 437 IPR000595 -
Chy06g01131 566 CDD CAP_ED 335 437 IPR000595 -
Chy06g01131 566 SUPERFAMILY Voltage-gated potassium channels 16 258 - -
Chy06g01131 566 SUPERFAMILY cAMP-binding domain-like 262 452 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00350 Chy-Chr4:3112466 Chy06g01131 Chy-Chr6:9811722 2.04E-141 dispersed
Chy06g01131 Chy-Chr6:9811722 Chy09g00524 Chy-Chr9:5434026 1.22E-87 dispersed
Chy06g01131 Chy-Chr6:9811722 Chy06g00103 Chy-Chr6:680407 2.95E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01131 K21867 - csv:101205212 1101.27