Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01142 ATGGGCAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGTGGTTCAGTCATCACCGTCCTCATCGCCACAGCTACCTCCGCAGACTAGTACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGCTGTGGGAAAAGTGAAGAAGAAGGCTGGAGGATCTAGGCTGTGGATGCGTCTTGACCGGTGGGGGCAATCAGAGCTTTTAGAGTGGGACAAGAATGCTATAATCAGACGTGTTGGAATTCCGGCCAGGGATATGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAATATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTTATAAAAGCTATAGTTACTGCAGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTCGCGAAGACAGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAGGCTGCTGAAGGTGAGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTAGTGTGCTTGTACTTAGATTCCAGCGTGGCAGACCTTGAGAGGGATGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGTACCAAGAATTTAGAACGTGTGAGAAGTTTGAAAAGTAATCTTACTCGTATTCTTGCACGTGTTCAGAAGGTGCGGGACGAGATAGAACATCTCTTGGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTCGATGCTTTGATGGGAGGAGGTGGGGCTTCCAACAGCACAACTGCTGTTGTTCCTCATCTCCGTCGACTTAGTTCCAACAGGAGTGGCAGTGTGGTGACCAGCAATCTTTTGGATGATAATGACGTAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGCTGGATGGAACTCGTAACAGGATTTTATCGGTTAGGGAATACATCGACGACACCGAAGATTACGTCAACATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACATTGACTATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCGGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGAAAGATGGGGTGTTCGGGTACTTTGTCGGAGGTACTTCAGCAGGGTGTTTGTTGCTTTTCCTGCTTATTCTTGGGTATGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1332 45.72 MGKGPFSFRRSSSRRRPKKVVQSSPSSSPQLPPQTSTSSPPINNNGNGLVGGGGGGAVGKVKKKAGGSRLWMRLDRWGQSELLEWDKNAIIRRVGIPARDMRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCLYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALMGGGGASNSTTAVVPHLRRLSSNRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYEKDGVFGYFVGGTSAGCLLLFLLILGYAKWKKLLGS* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9979034 9986950 + Chy6G116700.1 Chy06g01142 228851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01142 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 443 IPR039204 -
Chy06g01142 443 Coils Coil 240 274 - -
Chy06g01142 443 Gene3D Magnesium transport protein CorA, transmembrane region 145 374 - -
Chy06g01142 443 MobiDBLite consensus disorder prediction 18 46 - -
Chy06g01142 443 CDD Mrs2_Mfm1p-like 71 440 IPR039204 -
Chy06g01142 443 Pfam CorA-like Mg2+ transporter protein 244 435 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Chy06g01142 443 Gene3D - 59 142 - -
Chy06g01142 443 ProSiteProfiles Pumilio RNA-binding repeat profile. 301 336 IPR001313 GO:0003723
Chy06g01142 443 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 443 - -
Chy06g01142 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Chy06g01142 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 379 429 IPR045863 -
Chy06g01142 443 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01335 Chy-Chr4:19898561 Chy06g01142 Chy-Chr6:9979034 1.55E-98 dispersed
Chy05g00411 Chy-Chr5:4368486 Chy06g01142 Chy-Chr6:9979034 1.14E-108 dispersed
Chy06g01142 Chy-Chr6:9979034 Chy12g00750 Chy-Chr12:11501315 8.30E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01142 K16075 - csv:101203496 751.895