Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01142 ATGGGCAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGTGGTTCAGTCATCACCGTCCTCATCGCCACAGCTACCTCCGCAGACTAGTACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGCTGTGGGAAAAGTGAAGAAGAAGGCTGGAGGATCTAGGCTGTGGATGCGTCTTGACCGGTGGGGGCAATCAGAGCTTTTAGAGTGGGACAAGAATGCTATAATCAGACGTGTTGGAATTCCGGCCAGGGATATGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAATATACTCGCCAGGGAAAAGGCCATGGTTGTTAATTTAGAGTTTATAAAAGCTATAGTTACTGCAGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTCGCGAAGACAGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAGGCTGCTGAAGGTGAGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTAGTGTGCTTGTACTTAGATTCCAGCGTGGCAGACCTTGAGAGGGATGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGTACCAAGAATTTAGAACGTGTGAGAAGTTTGAAAAGTAATCTTACTCGTATTCTTGCACGTGTTCAGAAGGTGCGGGACGAGATAGAACATCTCTTGGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTCGATGCTTTGATGGGAGGAGGTGGGGCTTCCAACAGCACAACTGCTGTTGTTCCTCATCTCCGTCGACTTAGTTCCAACAGGAGTGGCAGTGTGGTGACCAGCAATCTTTTGGATGATAATGACGTAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGCTGGATGGAACTCGTAACAGGATTTTATCGGTTAGGGAATACATCGACGACACCGAAGATTACGTCAACATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACATTGACTATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCGGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGAAAGATGGGGTGTTCGGGTACTTTGTCGGAGGTACTTCAGCAGGGTGTTTGTTGCTTTTCCTGCTTATTCTTGGGTATGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1332 45.72 MGKGPFSFRRSSSRRRPKKVVQSSPSSSPQLPPQTSTSSPPINNNGNGLVGGGGGGAVGKVKKKAGGSRLWMRLDRWGQSELLEWDKNAIIRRVGIPARDMRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCLYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALMGGGGASNSTTAVVPHLRRLSSNRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYEKDGVFGYFVGGTSAGCLLLFLLILGYAKWKKLLGS* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9979034 9986950 + Chy6G116700.1 Chy06g01142 228851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01142 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 443 IPR039204 -
Chy06g01142 443 Coils Coil 240 274 - -
Chy06g01142 443 Gene3D Magnesium transport protein CorA, transmembrane region 145 374 - -
Chy06g01142 443 MobiDBLite consensus disorder prediction 18 46 - -
Chy06g01142 443 CDD Mrs2_Mfm1p-like 71 440 IPR039204 -
Chy06g01142 443 Pfam CorA-like Mg2+ transporter protein 244 435 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Chy06g01142 443 Gene3D - 59 142 - -
Chy06g01142 443 ProSiteProfiles Pumilio RNA-binding repeat profile. 301 336 IPR001313 GO:0003723
Chy06g01142 443 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 443 - -
Chy06g01142 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Chy06g01142 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 379 429 IPR045863 -
Chy06g01142 443 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01142 K16075 MRS2, MFM1; magnesium transporter - csv:101203496 751.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01335 Chy-Chr4:19898561 Chy06g01142 Chy-Chr6:9979034 1.55E-98 dispersed
Chy05g00411 Chy-Chr5:4368486 Chy06g01142 Chy-Chr6:9979034 1.14E-108 dispersed
Chy06g01142 Chy-Chr6:9979034 Chy12g00750 Chy-Chr12:11501315 8.30E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01335 . 1 426 MRS2 Gene Family AT1G16010 81.3 1.3e-191 666.0
Chy03g00716 . 1 378 MRS2 Gene Family AT1G16010 52.7 3.4e-107 385.6
Chy01g00143 . 37 298 MRS2 Gene Family AT1G16010 51.1 9.4e-57 218.0
Chy05g00362 . 1 366 MRS2 Gene Family AT5G64560 79.9 8.1e-158 553.5
Chy05g00411 . 1 370 MRS2 Gene Family AT5G64560 69.0 8.4e-131 463.8
Chy01g00143 . 1 321 MRS2 Gene Family AT3G19640 63.2 1.6e-94 343.6
Chy01g00142 . 12 183 MRS2 Gene Family AT3G19640 68.0 5.1e-56 215.7
Chy06g01142 . 59 444 MRS2 Gene Family AT3G58970 69.5 5.1e-140 494.6
Chy03g00716 . 3 378 MRS2 Gene Family AT2G03620 68.4 7.4e-136 480.7
Chy04g01335 . 13 423 MRS2 Gene Family AT2G03620 53.9 4.7e-106 381.7
Chy05g00362 . 1 328 MRS2 Gene Family AT5G09690 75.2 3.1e-126 448.4
Chy05g00411 . 1 332 MRS2 Gene Family AT5G09690 65.7 8.2e-111 397.1
Chy04g01335 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.4e-78 288.1
Chy05g00362 . 23 288 MRS2 Gene Family AT5G09720 67.6 1.1e-88 323.6
Chy05g00411 . 34 292 MRS2 Gene Family AT5G09720 62.0 3.2e-77 285.4
Chy04g01335 . 1 419 MRS2 Gene Family AT1G80900 84.7 2.3e-188 655.2
Chy03g00716 . 1 378 MRS2 Gene Family AT1G80900 54.1 3.2e-105 379.0
Chy12g00750 . 53 392 MRS2 Gene Family AT5G22830 83.5 1.3e-157 553.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01142 Chy_Chr06 FPKM 22.1066 26.241705 64.252525 64.124077 300.772766 328.178925 288.34259 11.651991 9.695883 10.30356