Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01157 ATGGGTTGCGTTTGCTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGATAGGGTGTCAAGTAAGACCTCTTCTGACCTGCGGGTTGCAAGACTGACTTCGTCATCGAGGGAAGAAGCTTATCGAGCTAAAGATCAGTATGATGGTAATGATGCGAGAGTGACGTTGATTGACAAGCAGGTGAATGGGTCGGGTCGACTGCCAGGCGAGAATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGACTGCTCAACATCCTTCAATGGGGATAATTCCGAAGGCAGCAGAGGGAGACCACATTGCTGCAGGGTGGCCGCCATGGCTGGCTGCAGTTGCAGGAGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAGCCCCCTCCCAACCAACTCACTCACACACTTCTAGAGAAGAAAGTCAGAAAATGGACACTCTGCGTACACACCTCATTTTGAAAAAGTTGGATTATCTCAGAATTGAGAGTGATATTACTTGGACGATAATTGGCCAAGGGACTTATAGTAATGTATATAGGGCTCGGGATCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGCGTTCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTTACATCTCGGATGTCTTGCAGCCTCTATCTTGTTTTTGAGTACATGGAACATGACCTGGCAGGACTTGCATCGCACCCTGGTGTGAAGTTTACAGAGGCGCAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATCATGGCGTCTTGAAAATTGCAGACTTTGGTCTAGCAAGTTTTTTTGATATCCATCAAAATCAGCCTTTGACTAGTCGGGTTGTAACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACGGAGGTGGAACAGTTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGGAAATCAAGGTTGCCTCATGCAACAATATTTAAGCCCCAACAACCCTATAGACGTTGTGTTGCAGACACATTTAAGGATTTTCCTGCACCTGCTTTAGCTCTCATTGAGACCTTGCTCTCTATAGATCCTGCAGATCGTGGCTCTGCTGCTCTCGCCCTTAAAAGTGAATTTTTTTCAACAAAGCCACTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCAAGCAAAGAATTTGATGCCAAAATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACATCGGCTTGACCTGCAAAGAAAAGATCGAGATTCTCGAGCTGTCCCTGCACCTGATGCCAATGCTGAATTAGCCTCATCAATGCAGAAAAGACAAGGCCTGTCCGGTTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAGGCATCTGGCTTTCCAATTGATCCACCTAGACCTTCACAAGGAGCAGAAAGAATGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGTGCTGCTTGGGCGAAGGCTAGTAGGAACCCAGATGACCCTCCCAAACTTTCAACTGGGACCGAAACTTTCGCAACTTCAGGACTAGTAGCAGCTAGAAGAAGTATGCTGGCTGAAGATTGTAGGGAAAAATCTGATTCTTCACAAGGAGAGGTTCAAAAGCTAATTGGTAGGTTTCCCGGTTCCTTCAAAGAAACCTCGGAGTCGTCAATGCTACCGGACCAGAAGTTCTCAAATCACAGTATTGCAGGCTCACACGACAAAGAGAGGAGCAGTACTAAAGACCCTATAGTTGTGGGTTATGGCTCGAAGGGTCATAAGATTCATTATTCTGGTCCATTACTGGTTCCTTCCGGTAACATGGACCAAATGTTGAAGGACCATGACCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCCAAGGTACGGAAGATTCAAGCTGATGGGAAACAGATGTCGACAAATTCATTATTCGTCTCAGGTCGTTAA 2253 45.58 MGCVCCKPSAIEDSKESPRDRVSSKTSSDLRVARLTSSSREEAYRAKDQYDGNDARVTLIDKQVNGSGRLPGENFERKREKMEHMTAQHPSMGIIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKAPSQPTHSHTSREESQKMDTLRTHLILKKLDYLRIESDITWTIIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNHGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRDSRAVPAPDANAELASSMQKRQGLSGSKSRSEKFNPHPEEASGFPIDPPRPSQGAERMDSQVRHPKKASHSGPLAQRAAWAKASRNPDDPPKLSTGTETFATSGLVAARRSMLAEDCREKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIAGSHDKERSSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKIQADGKQMSTNSLFVSGR* 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10239150 10244677 + Chy6G116850.1 Chy06g01157 228866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01157 750 Gene3D Phosphorylase Kinase; domain 1 175 256 - -
Chy06g01157 750 MobiDBLite consensus disorder prediction 488 609 - -
Chy06g01157 750 MobiDBLite consensus disorder prediction 12 27 - -
Chy06g01157 750 MobiDBLite consensus disorder prediction 647 664 - -
Chy06g01157 750 ProSitePatterns Protein kinases ATP-binding region signature. 180 203 IPR017441 GO:0005524
Chy06g01157 750 MobiDBLite consensus disorder prediction 646 679 - -
Chy06g01157 750 ProSiteProfiles Protein kinase domain profile. 174 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g01157 750 PANTHER CYCLIN-DEPENDENT KINASE 179 732 - -
Chy06g01157 750 PANTHER CELL DIVISION PROTEIN KINASE 1 151 - -
Chy06g01157 750 PANTHER CELL DIVISION PROTEIN KINASE 179 732 - -
Chy06g01157 750 MobiDBLite consensus disorder prediction 134 154 - -
Chy06g01157 750 Gene3D Transferase(Phosphotransferase) domain 1 257 497 - -
Chy06g01157 750 MobiDBLite consensus disorder prediction 1 50 - -
Chy06g01157 750 MobiDBLite consensus disorder prediction 488 514 - -
Chy06g01157 750 MobiDBLite consensus disorder prediction 35 50 - -
Chy06g01157 750 MobiDBLite consensus disorder prediction 523 539 - -
Chy06g01157 750 SUPERFAMILY Protein kinase-like (PK-like) 177 466 IPR011009 -
Chy06g01157 750 CDD STKc_CDK9_like 168 458 - -
Chy06g01157 750 PANTHER CYCLIN-DEPENDENT KINASE 1 151 - -
Chy06g01157 750 SMART serkin_6 174 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g01157 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Chy06g01157 750 Pfam Protein kinase domain 179 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01157 Chy-Chr6:10239150 Chy09g00032 Chy-Chr9:301478 0 dispersed
Chy11g01132 Chy-Chr11:17026145 Chy06g01157 Chy-Chr6:10239150 1.61E-80 dispersed
Chy11g01133 Chy-Chr11:17027780 Chy06g01157 Chy-Chr6:10239150 1.21E-158 dispersed
Chy06g01157 Chy-Chr6:10239150 Chy12g01147 Chy-Chr12:16403329 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71332 PF00069 Pkinase 6.40E-68 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01157 - - csv:101222182 1397.49