Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01159 ATGGCCGCAACGACAACGAGCATTGGAGCTCTGTGGAGTTTAAGAAGAGCAGTTCAGTTTTCGAGTTTCCGAAGACCCCTTTCCCTTAATCTCAATAGGCTCTGCTTTAACGAGGCCCGGTTTCCCTCTTCTCCTCTGGGGACCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAGCAAATTCTTGTGATGGCTAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTTACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAATTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGTCATGCAGATGAACTAACAAGTGATCCGGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGTTCACATGGGGACTTCCTTGGATCAATTCTTGGTACTGGCATTGCTAGAGAAAAGCTTGGTGATATCATACTCCAGGAAGAAACGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGATATCATCACTGCGCAAGGTTGGCAATGTCACAGTTTCTTGTACGAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCGCTTAGGGTGGATGCTATAGCAAGTGCTGGATTCAAGATTTCAAGATCTAAACTAGTGGATTTAATCAGTAGCGGGGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCAATTTAAAGACCGGTGATATTGTTTCTGTTAGTGGCAAAGGGAGGCTAAAGATTTCTGAGAAGGAAGTGATTGTCTGGAATCCGTGA 933 43.19 MAATTTSIGALWSLRRAVQFSSFRRPLSLNLNRLCFNEARFPSSPLGTSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPITKNGTNLKTGDIVSVSGKGRLKISEKEVIVWNP* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10260762 10267409 + Chy6G116870.1 Chy06g01159 228868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01159 310 ProSiteProfiles S4 RNA-binding domain profile. 244 310 - -
Chy06g01159 310 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 50 302 - -
Chy06g01159 310 Gene3D - 145 227 IPR012677 -
Chy06g01159 310 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 50 302 - -
Chy06g01159 310 TIGRFAM PS_II_S4: photosystem II S4 domain protein 77 302 IPR017506 -
Chy06g01159 310 Gene3D - 236 295 IPR036986 GO:0003723
Chy06g01159 310 CDD S4 245 304 - -
Chy06g01159 310 SUPERFAMILY Alpha-L RNA-binding motif 126 302 - -
Chy06g01159 310 SMART s4_6 244 306 IPR002942 GO:0003723
Chy06g01159 310 Gene3D - 75 137 - -
Chy06g01159 310 Pfam S4 domain 245 290 IPR002942 GO:0003723
Chy06g01159 310 Pfam Putative RNA-binding domain in YlmH 150 225 IPR040591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01159 - - - csv:101221944 562.762
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g212 . . . . Bpe09g00236 . . Bma13g00952 . Cmo04g00586 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1060 . . . . . . Blo10g00761 . Bda12g00838 . . . . . . . Cma04g00552 . Car04g00521 . . Cpe01g00494 . . . . . . . Cla05g01006 Cam05g1095 Cec05g1105 Cco05g1098 Clacu05g1091 Cmu05g1042 Cre05g1115 . . Chy06g01159 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010642 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01159 Chy_Chr06 FPKM 0.806668 0.761992 0.450266 0.879165 1.304816 0.0 1.52532 1.455842 3.957026 2.609669