Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01160 ATGGCAATGGCTTCAGCTCTGGCCCTCAATCCCCTCAAATTGGCTTCCACTTCTCAGGTATGTCTGGAGAACAAGGCTGCAAACGACACCAACGCTTTGTTATCGGACCTCTCCCGCCAATTCTACACCCTTAGATGCGTCTCCGGCACCGGCAGTAGCATTGCGATCAAGGTTCACGACCATTCCATTCCCAGGAGACAACAGCTAATCGCTTCGTCGCTTTCTGGTGTTAAGAAGAGAAGAATGGTACGTGAGGACACCTACATGTTATCTTATGGTGGGTCAATCTTATATTCACCACCTCCAAAACCATTTTCACACAAACTCCCGAACTGTTTTGATTCTCGGCCTCTTTTTATGAAGATGCGCAATGCTGGAGCTGTTATCCACAGACATAGTAAGGAATCCTATCTTGTAACACTGAGGAACCATCATCAGGGTCGGATTGGGAGCATCAAAGGAATCTCAAGCAACATTTCTGTTAAGGCTGGGGCTCAAGGTTTAGATAATAAAAATGAATGGTTGCCACGTTGCATAGTTCTTGATATTGAAGGGACTACCACTCCAATCTCTTTCGTTACCGATGTCCTCTTTCCGTATGCTCGTGATAATGTTGAAAAGCATTTGATTTTAACATTTGAAACTGGAGAAACTCAAGATGACATCAAGTTGTTGCGTTCACAAGTTGAAGAAGACTTGGAAAAAGGAGTTGCTGGAACTGTGCCTATTCCTCCTGATAATGCTGGGAAAGAGGAAGTCATTGCAGCAGTGGTTGCTAATGTTGAAGGAATGATAAAAGCTGACCGCAAGATAACTGCCTTGAAACAATTGCAGGGTCACATATGGAGAACAGGATTTTCAGGAAATGAGTTGGAGGGAGTAGTTTTTGACGATGTGCCAGAGGCTCTTGAGAGATGGTATGCTTCGGGCATTAAGGTGTACATATACTCGAGCGGCAGCAGGTTGGCACAAAGGCTCATATTTGGAAAGACTAATTATGGTGATCTAAGAAAATACCTATCTGGATTCTTTGACACTGCTATGGGGAACAAAAGAGAAACAAGCAGTTATGTTGAGATTTCAGAATCTGTTGGAGTTGATTCACCATCAGAGATATTGTTCATCACAGATGTTTGTCAGGAAGCTAAAGCAGCAAAAGCAGCAGGTAATGAGTCTACTTTAAGCTATTCTTTGTTCCTTAATGTAAGGAAAACGAATAAAATCCATTCGTGCTGTAACCGAACTGCATTTGCCTGA 1257 43.12 MAMASALALNPLKLASTSQVCLENKAANDTNALLSDLSRQFYTLRCVSGTGSSIAIKVHDHSIPRRQQLIASSLSGVKKRRMVREDTYMLSYGGSILYSPPPKPFSHKLPNCFDSRPLFMKMRNAGAVIHRHSKESYLVTLRNHHQGRIGSIKGISSNISVKAGAQGLDNKNEWLPRCIVLDIEGTTTPISFVTDVLFPYARDNVEKHLILTFETGETQDDIKLLRSQVEEDLEKGVAGTVPIPPDNAGKEEVIAAVVANVEGMIKADRKITALKQLQGHIWRTGFSGNELEGVVFDDVPEALERWYASGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTAMGNKRETSSYVEISESVGVDSPSEILFITDVCQEAKAAKAAGNESTLSYSLFLNVRKTNKIHSCCNRTAFA* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10267555 10273160 - Chy6G116880.1 Chy06g01160 228869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01160 418 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 177 391 IPR023943 GO:0000287|GO:0019509|GO:0043874
Chy06g01160 418 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 147 395 - -
Chy06g01160 418 SFLD C1.5.4: Enolase-phosphatase Like 177 393 - -
Chy06g01160 418 Gene3D - 190 285 - -
Chy06g01160 418 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 5 143 IPR017714 GO:0005737|GO:0019509|GO:0046872
Chy06g01160 418 SFLD enolase-phosphatase 177 393 IPR023943 GO:0000287|GO:0019509|GO:0043874
Chy06g01160 418 Gene3D - 27 172 IPR036409 -
Chy06g01160 418 Pfam Class II Aldolase and Adducin N-terminal domain 34 142 IPR001303 -
Chy06g01160 418 Gene3D - 286 407 IPR023214 -
Chy06g01160 418 SUPERFAMILY HAD-like 177 392 IPR036412 -
Chy06g01160 418 CDD HAD_EP 178 395 IPR023943 GO:0000287|GO:0019509|GO:0043874
Chy06g01160 418 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 5 143 - -
Chy06g01160 418 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 147 395 IPR017714 GO:0005737|GO:0019509|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01160 K16054 DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] - csv:101221712 736.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g01160 Chy07g00069 CCT
Chy06g01160 Chy07g00069 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01160 Chy-Chr6:10267555 Chy07g00069 Chy-Chr7:653156 5.57E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01160 Chy_Chr06 FPKM 1.981481 1.445372 9.613175 7.816509 6.646821 6.729946 7.351765 13.67022 14.488225 14.679387
Chy06g01160 Chy_Chr00 FPKM 1.138202 0.0 0.0 0.882205 0.0 0.823252 0.975865 2.083284 2.267589 3.080489