Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01166 ATGCGATTGTCGTCGGGTTCGGTTTCCTCGTCGTTGAACCAGAGTGGGAATCGGTCTGGGCCTAGGCTTAAGAAGAAGCATAAGAGGCTTGATGCCATATGCGAGAAGGAGTATAGTCGAAACCATGGGGATGTGAATGAGAATGTCATTGGGTTGGGGACTCTGGAGGCTGACCCTGGGCTTCGCCGGAGCAGCCGTGTTCGTCGGGCCCCGGTTTTGCTTGATGCTTCCCCTATCCCGAGGAAGAAGCGGCGGATAGTTCATGGGAATGGAACTTTGGGTGTTAGAACGAGTGCGAACACTCTGCCTCTGTTCAGCGATGATTTGAAGGATGAGACTGAGGGGAATTGGAGATCGAGGTTGAGATCAAGGAGCAGAAATTTGGGGATTAGAGTGGACAAAGGTGCTCGGGCAAGTAGGAAAAGGAAACTTTTTGATGAAATTGTTGATGTGAAAGTAAGAAACGGCGGAATGAGGATAGATTTGGATGAGGAAAAAGGGAGAATGGAATTTGGGGAATCTATGGTTGGAAGGTCCAACAGAACGAGGAGGAGGTTTGGAGTGACTAATGATCCAATTAAAATAGAAGAGGAGGTGAAGTCTCCTCGAATTAAGGATGATTGTTGCAAGAAAGACATGTTGGGTAAAGAAGTTGTGACTGCGAAGGATGAGAGAGGGGAGGGTGTTTTGCCTTCGGAAAATGAAATGGATGAAGAAAATGTGAAAGTAGTGGATGATGTTACTCCTCAGCTTGTTGAAAAATTAGACAAAGAAACTTCAAGTTCTTTGCACGTAGATGAGGCTTGTAGTGGTGATCATGATGAAGAACCTGCCAATGCAGTGGAGAATGCAAACAATGGTGAGATACAACTGGAAGAATCAAAACAGCTAAATGAAGGTGTAAATGAAACTCAAGATGTAGCGGCTGCTGTAGTTTCAACAAATGAAGTGGTAGGTGGAAGATCTTGCAATGAGAAAGCTGTTGATTTGGGCAAGTTTACTGAAAAATCTAGGGAACATGGTGATGATTTAAATTTAAAGAAGTTTACAGACAGTTCCACGGGTATGTTGGGTAAGGCTCGCATTAAAGAGGGCCGAAGGTGTGGATTATGTGGAGGAGGAATTGATGGTAAGCCTCCCAAGAAGACGGCTCAGGATTCGGGTGAGAGTGGAAATGAAGCTTGTAGTGGCTCTTCTGCTTCAGAGGAACCAAATTATGACAAATGGGATGGTTTTGGTGATGAACCTGGATGGCTTGGACGCCTCTTAGGTCCTATTAATGATCGTTATGGCATTGCTGGAATATGGGTCCATCAACACTGTGCAGTTTGGAGCCCTGAGGTTTATTTTGCTGGATTGGGATGCTTGAAAAATGTAAGGGCTGCTCTTTGCAGGGGAAGAGCATTAAAGTGCACTCGGTGTGGGAGACCTGGTGCAACCATTGGATGCCGTGTTGATCGATGCCCCAGAACTTACCACTTGCCATGTGCACGTGCTAATGGTTGCATATTTGATCACCGCAAATTTCTCATAGCTTGCACAGATCATCGTCACATCTTCCAGCCTCATGGTAATCAGTATTTAGCTCGTATAAAGAGATTAAAGGCCAAAAAAATGAAATTGGAAATAAAAAAGCAATCAAATGATGCTTGGCGAAGGGATATTGAGGCTGAAGAAAAGTGGTTGGAGAACTGTGGGGAGGATGAAGAGTTTTTGAAAAGAGAGAGTAAGAGACTTCATCGAGATTTGGTAAGAATTGCACCTGTATATATTGGCGGGTCAAATTCAGAAGGAGAAAACTTATTTCATGGTTGGGAGTCGGTTGCTGGGCTTCAAGGTGTCATCCAATGTATGAAAGAAGTAGTATTCTTACCACTCTTGTATCCTGAGCTTTTTGATCGCTTTGGGATTACACCTCCTAGAGGTGTTCTTTTGCATGGATATCCTGGAACTGGTAAAACACATGTTGTTCGAGCATTGATAGGTTCCTGTGCTCGTGGTGATAAACGGATAGCATATTTTGCTCGTAAAGGAGCCGATTGCTTAGGGAAATATGTTGGCGATGCAGAACGTCAGTTAAGGCTTCTATTTCAAGTTGCAGAGAAATGCCAACCTTCTATTATATTTTTTGATGAGATAGATGGGTTGGCACCATGTCGTACAAGGCAGCAAGATCAAACGCATAATTCAGTTGTGTCGACATTGCTTGCTCTATTAGATGGTCTAAAATCTCGGGGGTCTGTTGTAGTTATTGGTGCCACAAACCGCCCTGAGGCAGTTGATCCAGCTTTAAGGCGGCCTGGGAGATTTGATCGGGAAATTTATTTTCCCTTGCCATCGGTTGAGGATAGGGCTGCTATTCTCTCCCTTCACACTCAAAAGTGGCCTAAGCCAATTGATGGACCCTTACTCCAGTGGATTGCCAGAAGAACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACCCAAGCAGCCATGAGTGCTTTGAAAAGAAATTTTCCTCTTAAAGAAGTTCTGTCAGCTTCTGGAGAACAAGTTTCCAGAGTTAACCGTCCTCCTCTTCCGTCCATTTTAGTGGAGGAGCGAGATTGGTTAGAAGCTTTATTATATTCTCCACCTCCATGCTCACGTAGAGAAGCAGGGATGGCTGCTAATGATGTGCCATCCTCCCCTCTTCCCTTACATCTCATTCCTTGTCTCCTTCAACCACTGTCAACTTTACTTGTTTCCCTTTATCTTGATGAACGTATCACCTTGCCGACTAATCTTTTGAAAGCTGCAACTTTAATTAAAAGTGTTATTGTTAGTGCTTTGGATGGAAAGAAAATTGTAACTAGTTGCTGGTGGTCGCATGTTCATGATTTTGTTCAGGATGCTGATATTGCAAATGAGATAGAGATAAAGCTGCAGGGTTCTGGAGTGTTAGTTGAGGATTCTACTTTTGGTAGTTCTGGTGTTCTCAACATTGACACAAGCAATGAAAGTTCCAAGTTTGAAAATCTAGGTCATTGTGGTGGCCGACCCACTACCATGGTAGAGCACACATCATTCACCTTGGGAAATAAATCTGGCTTTCGTATTTTGATTGCTGGGAATCCCAGATCTGGACCAAGGCATCTTGCTTCTTGTCTTATTCACTGTTATATTCAACACGTTGAAGTCCGAAAGGTTGATATAGCTACAATTTCACAAGAAGGTCATGGTGATTTGGTGCAAGGCATTTCACAAATACTATTGAATTGCTCTAGCATGGGATCGTGTCTGGTGTTCATGCCAAGAATTGACTTGTGGGCTATTGAGACACAAAGTCAAACATCTGAGTGTGGTTTTTATCCGAATGAGGATCAATATCTTGAGGATGGAACTATTGTCAAAGACGACGATCAACTTGGTGAAAGAGAAAACCGTCGTTATTCAGACCAAAGCAAAGCCACTGAGAGGACTGGACTTGAGGATGAATGTCTTTCTAGTGCTTCATATGCCTGGAGTTCATTTGTTGAGCAAGTTGAATCGCTATCTACACCCTTGATGATTTTGGCCACATCCGAAGTTCCATTTCTGCTACTTCCACAAGAGATAAGGCAGTTCTTCAGGAATGACTTGTCAATGTGTCGACCAACCACTTCAGAGCATTCGGTACCTAGGTTCTCTGTGCAGATTGATGGAATTTTCGACCATGACATGGTAATCAATCAGTGTGCGGCAGAATTATCAAGGGACTTTGTGAAACTGCTCGTTCATTTGATTCACCAAAAGTCTCATACCAGAACATCTACATGCACAAAATACCAAATTCCTGTTATCCAAGGTGAGAATAATGCAGAAAATCAACAAATAGATAAAGAAACTGCCAGCGAGCACAATGGAGAAATGAAATCCCCAGATGTTTCTTCTCTCAGAATTGCACCACTACCTGGCAGTAGAACCATGAAAGTGAAATCAAACTTGATTTCAGTAATATCTACTTTTGGTCATCAAATTCTGCGATACCCCCATTTCGCTGAGCTTTGTTGGGTGACGTCAAAGTTGAAAGAAGGCCCCTACGCAGATGTTAGTGGACCCTGGAAGGGATGGCCATTCAATTCTTGTATTATTCGCCCGATGAGCACATTGGAGAAGGGAGCATCATCAAGCAGCTTGAGTAATGGAAAATCTAAAGAAATTTCAGGTTTGGTAAGAGGCTTGATTGCTGTTGGTTTATCAGCAATCAGAGGTGCCTACACGTCACTAAGGAAAGTCTCTCTTGATGTGCGATTGGTACTTGAGCTCCTAGTTGAACAGATAAATGCAAAAATTGATTCCGGGAAAGACCGGTATCAATATTTTCGCCTTCTATCACAAGTTGCATATCTGGAAGATGTAGTTAATAGCTGGGCCTTCATTCTGCAAAGCTTGGAACATGACTCTCGAACAGTTGAAACATCAAAGAATCTCACTTCTGGTGGTAGTGAGATTCATTGTGAGAAAAACGAACCCATTATATCCAACAAAAGGTCTTTTGCAAATGAAATTCCAGAAGTCAGTTGTCAGGAACCTGTTGAGGAGGAAATTGTACGAATTGATTCCTTAGTAGATGGAAATTTGAATCATTCTAGTTCCAAGGATACAACAATAGTTTCAGAAGAACATGGAGAGAGGAATTTTGGCATTGGTAATTTAGTCTCTGACGAGACCTACGACAATGCTGCTGCTGTTGACGATCAGTTAATTGATAATATTCCATTGAAACACGGCGAGGCAACAATTCTTCAACCAGACAGTTTGGACAATGAGATAAACGACACATCGGTTAAAACACCATTAGATTTGGGAACGGAATCAATTGTTGATTTGGAACATCATCATCAAAACTCAAGTGTGTTATGTGGTGATGAAATCCCTAGCGGTACAAAACCCTGCAGCACTAGTAATGGAGGTTGTTCTGCCTTAGAAAACGGTTGCAAACGTGACGATAGCCAGCTTGACACAAATGACCTTGAAGTGAATGTTCACTCATCTCCAAGCAGAAGTGGCCACTCTACCAACTCTGCTCTAATATGTTCTATTCAGTGCTGCACTGGTTGTTTAAATGTCCTATACAACATGTCGAAAAACATTCTTCGCAATGAATTGGAATCAAATCAAAATGATTGGACCATAGAGGATGTTCACGACGTTGTCGTGGCACTTTCAGTTGACCTTCTTGCAGCAGTAAGACGGGCATTTCTTGATGAAAAAAACGGCACTCTATTTGATGATAGACAAATGGGAGGCAATGGCAGGTTTAAATTCCGGGACTCGAGAACATGTGATTGCAAAAGTTCAAAAGACATGGTTTTTAAGGGAGTGGAATGTATTTGTCACTTGAGTGAAAAAGTAAGCCCCTCTCCTTATTCTGAAATGGGAATTGATCCAAACTTTATATTCAGAGATGGTGTATTGGTTAGCGTAGATCCCGAAAAGAACGTTTTGTTTCATTGTAAATTGGAGACTTTGTGCCTCTGTTCTCTTACAGAATTGATAGTAATGGCAAAAAAGCCTTTAAATTGA 5535 42.53 MRLSSGSVSSSLNQSGNRSGPRLKKKHKRLDAICEKEYSRNHGDVNENVIGLGTLEADPGLRRSSRVRRAPVLLDASPIPRKKRRIVHGNGTLGVRTSANTLPLFSDDLKDETEGNWRSRLRSRSRNLGIRVDKGARASRKRKLFDEIVDVKVRNGGMRIDLDEEKGRMEFGESMVGRSNRTRRRFGVTNDPIKIEEEVKSPRIKDDCCKKDMLGKEVVTAKDERGEGVLPSENEMDEENVKVVDDVTPQLVEKLDKETSSSLHVDEACSGDHDEEPANAVENANNGEIQLEESKQLNEGVNETQDVAAAVVSTNEVVGGRSCNEKAVDLGKFTEKSREHGDDLNLKKFTDSSTGMLGKARIKEGRRCGLCGGGIDGKPPKKTAQDSGESGNEACSGSSASEEPNYDKWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPRTYHLPCARANGCIFDHRKFLIACTDHRHIFQPHGNQYLARIKRLKAKKMKLEIKKQSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLVRIAPVYIGGSNSEGENLFHGWESVAGLQGVIQCMKEVVFLPLLYPELFDRFGITPPRGVLLHGYPGTGKTHVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILSLHTQKWPKPIDGPLLQWIARRTAGFAGADLQALCTQAAMSALKRNFPLKEVLSASGEQVSRVNRPPLPSILVEERDWLEALLYSPPPCSRREAGMAANDVPSSPLPLHLIPCLLQPLSTLLVSLYLDERITLPTNLLKAATLIKSVIVSALDGKKIVTSCWWSHVHDFVQDADIANEIEIKLQGSGVLVEDSTFGSSGVLNIDTSNESSKFENLGHCGGRPTTMVEHTSFTLGNKSGFRILIAGNPRSGPRHLASCLIHCYIQHVEVRKVDIATISQEGHGDLVQGISQILLNCSSMGSCLVFMPRIDLWAIETQSQTSECGFYPNEDQYLEDGTIVKDDDQLGERENRRYSDQSKATERTGLEDECLSSASYAWSSFVEQVESLSTPLMILATSEVPFLLLPQEIRQFFRNDLSMCRPTTSEHSVPRFSVQIDGIFDHDMVINQCAAELSRDFVKLLVHLIHQKSHTRTSTCTKYQIPVIQGENNAENQQIDKETASEHNGEMKSPDVSSLRIAPLPGSRTMKVKSNLISVISTFGHQILRYPHFAELCWVTSKLKEGPYADVSGPWKGWPFNSCIIRPMSTLEKGASSSSLSNGKSKEISGLVRGLIAVGLSAIRGAYTSLRKVSLDVRLVLELLVEQINAKIDSGKDRYQYFRLLSQVAYLEDVVNSWAFILQSLEHDSRTVETSKNLTSGGSEIHCEKNEPIISNKRSFANEIPEVSCQEPVEEEIVRIDSLVDGNLNHSSSKDTTIVSEEHGERNFGIGNLVSDETYDNAAAVDDQLIDNIPLKHGEATILQPDSLDNEINDTSVKTPLDLGTESIVDLEHHHQNSSVLCGDEIPSGTKPCSTSNGGCSALENGCKRDDSQLDTNDLEVNVHSSPSRSGHSTNSALICSIQCCTGCLNVLYNMSKNILRNELESNQNDWTIEDVHDVVVALSVDLLAAVRRAFLDEKNGTLFDDRQMGGNGRFKFRDSRTCDCKSSKDMVFKGVECICHLSEKVSPSPYSEMGIDPNFIFRDGVLVSVDPEKNVLFHCKLETLCLCSLTELIVMAKKPLN* 1845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10345355 10355359 + Chy6G116940.1 Chy06g01166 228875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01166 1844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 836 IPR027417 -
Chy06g01166 1844 MobiDBLite consensus disorder prediction 385 403 - -
Chy06g01166 1844 Gene3D - 604 875 IPR027417 -
Chy06g01166 1844 Pfam ATPase family associated with various cellular activities (AAA) 643 778 IPR003959 GO:0005524|GO:0016887
Chy06g01166 1844 SMART AAA_5 639 780 IPR003593 -
Chy06g01166 1844 MobiDBLite consensus disorder prediction 1 28 - -
Chy06g01166 1844 Pfam AAA+ lid domain 804 836 IPR041569 -
Chy06g01166 1844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 519 IPR013083 -
Chy06g01166 1844 CDD AAA 639 778 - -
Chy06g01166 1844 Pfam PHD-like zinc-binding domain 438 517 - -
Chy06g01166 1844 PANTHER AAA DOMAIN-CONTAINING 58 1840 IPR045199 -
Chy06g01166 1844 MobiDBLite consensus disorder prediction 1 19 - -
Chy06g01166 1844 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 58 1840 - -
Chy06g01166 1844 ProSitePatterns AAA-protein family signature. 748 766 IPR003960 GO:0005524|GO:0016887
Chy06g01166 1844 Gene3D - 779 871 - -
Chy06g01166 1844 MobiDBLite consensus disorder prediction 257 279 - -
Chy06g01166 1844 ProSiteProfiles Extended PHD (ePHD) domain profile. 397 517 IPR034732 -
Chy06g01166 1844 MobiDBLite consensus disorder prediction 379 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01166 - - - csv:101208571 3360.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00390 Chy-Chr3:5447526 Chy06g01166 Chy-Chr6:10345355 2.65E-81 dispersed
Chy04g01106 Chy-Chr4:17146979 Chy06g01166 Chy-Chr6:10345355 3.73E-16 dispersed
Chy06g01166 Chy-Chr6:10345355 Chy02g02596 Chy-Chr2:29168226 5.47E-37 dispersed
Chy06g01166 Chy-Chr6:10345355 Chy04g02055 Chy-Chr4:26092398 1.11E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01166 Chy_Chr06 FPKM 0.0 0.0 0.0 0.0 1.79746 1.518645 1.343182 0.425695 0.594521 0.717406