Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01168 ATGGACCCTATCGATGCCTCTCTTCATCAATCTTCTCCTTCAAGCGATGAAGCTTTGGATCTTTTAGAGCTTTTTTGGTTCTTTGACAATCTTCTTCTTAGGAGGAACCCCAAGATGTTGATCTCCCGCTCTGATCCTTGTCTTTCTAAACTTCCCCACCAGGTGTTTGTTGAAACTCCTCCTACTAATCTCTGCTCCTCTCCTTTGGATGCTGCTCTTTCCCTCCAGAATAATGGTGGTGCTGTACGTCGGAATCTGCTTCGAACGCCCTCCTTACCATCCCGTATGTATCGTGGACAGGGAATTCGAGAGGAAGGAAATGATTCTAGGCCTTTGGTGGAGCATTGTGTGCTTGTTGAAACTCCTGTTGATAATGTTTGCTCATCTTCTTTGGATATGGATGTTTCGACTGCAAATCGTGCTGGCAAATTTACGAATCTCCTCCGAACACCATCGTTACCGCCCCGTGTGGACCAAGAGGAAGGAAATGACTCTGGGCCATTATCTGAGCATGGTGTGTTTGCAGAACGTCCTGCTGATCATGCCTGCTTATCTACTTTGGATATGGGTTTTTCACCGGGAAATAGTGGAGATAAACGTCGGAGTCTTCGCCGAATACCATCATTACCATCCCGTGTGGAACGAGAACAAGGCATTCAAGAGAAAGGGGATGGTTCCAAGCCATTAATAGAGCATGGTTTGCTTCAAAAACCGGCCAAACCACCTTCTGTTGAGAGGAAAGAAGAAGGAATTCGCAGCAAAGAAAGTGGCAGCACTCGGAGGAGCAAATCGGCGAGGAAACCACCGCAGAGTAATCTGCTGAGAACACCATCCTTGCCACCATGTATAGGGAGGGAAAAGGAATTTGGAGAAAGGGAAGCTGCTGCTAGAATCAAAAACTCTATTCACCCAAACTTTTCTGAATTCTTTCCCACCAGACAAGAGATTCTTGAAAAGAAGTTCAGCCTCCCAATGTGTCGAATCCCGACAAGCAGTGACGAAATGTGGCACCAATTTCTCATCCAAATGAGGAAGAGAAGAAGCCAAAGTGAATTAGAATCAGAAGAACTGCAAGGTTTCAAGGACTTAGGATTCACATTTGACAAAAAAGATATAAACCCAACAGTGGTTGACATAATTCCAGGGTTAAGAGAGAAAAAAGAGGAAGAATTGGAGAGTGAAATAACTAGAAGGCCTTATCTTTCTGAAGCTTGGATGCTCCAAACTCATCTCCTTCCTCCAATTCCAAAATGGGACACTAGAAAATCAGCAGAAGACATGAAACAACAAATCAAGTTTTGGGCTAGAGCTGTTGCTTCTAACGTGCACTAA 1332 44.59 MDPIDASLHQSSPSSDEALDLLELFWFFDNLLLRRNPKMLISRSDPCLSKLPHQVFVETPPTNLCSSPLDAALSLQNNGGAVRRNLLRTPSLPSRMYRGQGIREEGNDSRPLVEHCVLVETPVDNVCSSSLDMDVSTANRAGKFTNLLRTPSLPPRVDQEEGNDSGPLSEHGVFAERPADHACLSTLDMGFSPGNSGDKRRSLRRIPSLPSRVEREQGIQEKGDGSKPLIEHGLLQKPAKPPSVERKEEGIRSKESGSTRRSKSARKPPQSNLLRTPSLPPCIGREKEFGEREAAARIKNSIHPNFSEFFPTRQEILEKKFSLPMCRIPTSSDEMWHQFLIQMRKRRSQSELESEELQGFKDLGFTFDKKDINPTVVDIIPGLREKKEEELESEITRRPYLSEAWMLQTHLLPPIPKWDTRKSAEDMKQQIKFWARAVASNVH* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10373563 10375527 + Chy6G116960.1 Chy06g01168 228877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01168 443 MobiDBLite consensus disorder prediction 147 172 - -
Chy06g01168 443 MobiDBLite consensus disorder prediction 241 262 - -
Chy06g01168 443 MobiDBLite consensus disorder prediction 198 228 - -
Chy06g01168 443 PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 6 100 - -
Chy06g01168 443 PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 128 443 - -
Chy06g01168 443 PANTHER - 128 443 - -
Chy06g01168 443 PANTHER - 6 100 - -
Chy06g01168 443 MobiDBLite consensus disorder prediction 185 284 - -
Chy06g01168 443 MobiDBLite consensus disorder prediction 263 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01168 - - - csv:101221005 803.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01168 Chy-Chr6:10373563 Chy02g00220 Chy-Chr2:1469476 3.71E-10 dispersed
Chy06g01168 Chy-Chr6:10373563 Chy01g00329 Chy-Chr1:2360908 8.56E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car16g00373 Cpe14g00343 . . . . . . . . Cla05g00996 Cam05g1087 Cec05g1095 Cco05g1089 Clacu05g1081 Cmu05g1031 Cre05g1105 . . Chy06g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012894 0 4 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01168 Chy_Chr06 FPKM 0.0 0.0 0.283662 0.0 0.482846 0.636657 0.497759 0.335262 0.268907 0.867879