Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01170 ATGAAGATCTCTTCCAAGTCCATTCTCAGTCCTGGCCGTCCCCGTGAACCCTCCCAAATCTCCCTCTCTACTTCCCTCAGTCGCCGTCTCAAATCCAGCGGTAGTCTCAAGGGTGGTCAAGCCTCCCCCATGTTTCCCACTGGCAGGAAGAAGCGTGGTTGTGCTTTTGATAATCCCGAACCCTCTTCGCCCAAGGTTACTTGTATTGGTCAGGTTAGGGTTAAGACGAAGAAGCAGGGGAAGAAGATGAGGGCTAGATCGCAGAAACGGAGGACTAATTCGGAGACCAGTTTTCGGAGATCGGAGAGTCTTGTTCAATCGTCGCAGGGTAATGGTAATGACCAGCAATTCTCGTCGCATCATAATCACCATCTTCTTCGTCAGAACAGTAATAGTAATGCTGGAAATGGTTTCCAGCAGGAATGCTTATCGCATCGGAACCAGCGGTGGGTGCATTTGCCGTTTACGATTTGTGAGGCGCTCAGGGCTTTTGGTGCTGAACTCAACTGCTTCTTGCCGTGCCATTCGTCTTGTTCTGGTAACAGGGAGAACAATAAGGAATCAAAGCCGGCAGAGAGGTCGTCGGAGAGTGAGAGTTCTTGTGGGACGGTGTTTGCGCGGTGGTTGGTGGCGGTGCAGGATGGAGACGGGAAGGGGAGAGAGATCGAGCTGGTGGTTGGAGATGAAGAAACTCGAACGGAGAAGGAAAATGGAAGCCAGAGACGGCATGTTTTTGAGGGATTAGACTTCAAAGATAAGAATGAGGCTGTGGAGGAGGAGGAATCTAGGATCAGCATTTGCATTCCTCCGAAGAATGCTTTATTGCTAATGAGATGTAGATCTGATCCGGTGAAAATGGCGGAGCTGGCGAAACGATTCTATGAACCTCCTGCGCCGAAAGTGGATGAAGAAGACGAGGAAGGAGAAGATGAAGACAATGAAGCACAAAAGAGACAAAATGAAGTGAAAAGAGATGTATCTGTGCCTGTGTCTTCCATTGTTACTGTAAATAAGGAAGAGGAAGACGTAGAGGAAGAAGAAGAAAGAAAAGTGGAGCAGCTCATTGTGAAGCTTGAAAACGACGAAGAAGTGAATGAAGAATGTGTTTCTGATGCAGATAAAGAAAAGGAAGAAGCTAATTTGGTTTTACAGGAAGAAGAACGAGAAGAAGAAGAAGACAATGAAGAGGAGACCATAGAAATGGCCACAGAAAACGAAATCGATGAGCAGAAAGATATTACTGTTGTAAACCAGCTTAATCAAGAACAAGCATTGGAGGAAAAAGAAGATGATAAAACGGATCAAGTTAGTCAGCAAGAAACAATGGCGATTCCAATTCCGCTTCTGATTCAGACCCACTGTGAACCCGAAATGGCTCAAGATGCAGAGAAGCTGGAATCTGTCGAAAAAGAGGAACCCAAGCTATCCCATGAAAGCGAACAAGGCCAGAAAACAGAAGAAGACGAAAACCTTAGAGAAGATAAGGAAGAAGAAGAGGAAGAAGGCGAAAATGGCGAAAACGGCGAAAACACCACTTCACCATCATTATCAGTAGAGACAGAACCAGTTTCAGACGAAACCGAAACTCAAGTTGATGTGAATAGAGAAGAAGAAGAGAAAACGACGGATGAAGGAATCGGACCCGACGACGAAAACGACGCATTGGTGGGTCCAGTGGAGGAGGACCAGTCCAAGGAGCGAGAAACTCCGCCGCCGGAGCCGGAGCCGGAACCGGAGAGAAAAACACAAACAGAAACATCCGTTCTCCCAGATTGCTTGCTGTTAATGATGTACGAGCCAAAGCTATCAATGGAGGTATCGAAGGAGACATGGGTTTGCAGCGCAGACTTCATAAGATGCGTTCCGACCAGGGAGAAGAAGGCGATCGGCAAAGACCCACCGCCGCCTCCGCCACCGAAGAAACGAGAAACGAAGCCGACAGACACTACGCAGACAGCGGTTGTTCAGCCAGCGAGATGGTCGTGTTCGTTTCCAGCGGCAGCAGCAGCGGCGGCGATGATAGAACAGAAGCTAGTAAGAGCCAAGGGTTACGAGCCGTTTGTTCTTACAAGATGCAAGTCGGAGCCGATGAGATCTTCGGCTAAGCTGGCGCCAGATGCTTGCTGTTGGAAGGATCGCAAGCTCGAGCCACACCGTCCGGCTACCTTCGGCGTCGGCGCGGCTGAAGTTGGATTTTGA 2199 48.7 MKISSKSILSPGRPREPSQISLSTSLSRRLKSSGSLKGGQASPMFPTGRKKRGCAFDNPEPSSPKVTCIGQVRVKTKKQGKKMRARSQKRRTNSETSFRRSESLVQSSQGNGNDQQFSSHHNHHLLRQNSNSNAGNGFQQECLSHRNQRWVHLPFTICEALRAFGAELNCFLPCHSSCSGNRENNKESKPAERSSESESSCGTVFARWLVAVQDGDGKGREIELVVGDEETRTEKENGSQRRHVFEGLDFKDKNEAVEEEESRISICIPPKNALLLMRCRSDPVKMAELAKRFYEPPAPKVDEEDEEGEDEDNEAQKRQNEVKRDVSVPVSSIVTVNKEEEDVEEEEERKVEQLIVKLENDEEVNEECVSDADKEKEEANLVLQEEEREEEEDNEEETIEMATENEIDEQKDITVVNQLNQEQALEEKEDDKTDQVSQQETMAIPIPLLIQTHCEPEMAQDAEKLESVEKEEPKLSHESEQGQKTEEDENLREDKEEEEEEGENGENGENTTSPSLSVETEPVSDETETQVDVNREEEEKTTDEGIGPDDENDALVGPVEEDQSKERETPPPEPEPEPERKTQTETSVLPDCLLLMMYEPKLSMEVSKETWVCSADFIRCVPTREKKAIGKDPPPPPPPKKRETKPTDTTQTAVVQPARWSCSFPAAAAAAAMIEQKLVRAKGYEPFVLTRCKSEPMRSSAKLAPDACCWKDRKLEPHRPATFGVGAAEVGF* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10388064 10390262 - Chy6G116980.1 Chy06g01170 228879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01170 732 MobiDBLite consensus disorder prediction 1 40 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 543 557 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 1 121 - -
Chy06g01170 732 Coils Coil 337 405 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 625 647 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 507 524 - -
Chy06g01170 732 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 1 732 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 362 588 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 457 490 - -
Chy06g01170 732 PANTHER CHLOROPLAST PROTEIN HCF243 1 732 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 98 121 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 491 506 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 362 383 - -
Chy06g01170 732 Coils Coil 481 501 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 625 653 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 295 326 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 558 584 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 528 542 - -
Chy06g01170 732 MobiDBLite consensus disorder prediction 384 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01170 - - - csv:101220770 1233.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02080 Chy-Chr4:26244805 Chy06g01170 Chy-Chr6:10388064 6.26E-09 dispersed
Chy07g00695 Chy-Chr7:6729996 Chy06g01170 Chy-Chr6:10388064 1.85E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01170 Chy_Chr06 FPKM 11.548992 14.499179 8.554878 7.781679 17.390661 11.951177 17.74004 7.967151 7.691623 7.94102