Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01171 ATGCCGGCTCTACTGCGATCTCCCACCTCCAAGTTCCGACTTCGATCCCCTTTTCTAATTTCTGGGTTTAGAACTCTCGTCACCACTTGCAGAGCCGTCCTTTTGCCTCACTTTGGTGGTCCGGAGGTTCTCCAACTCCGCTCCGACGTTCCCGTCCCCATTCTCAAGCCTCATGAAGTTCTTGTCCGCTCCCGCGCTGTTTCCATCAATCCACTTGATACCCGAATGCGATCGGGTTATGGTCGTTCAATCTTTGAACCACTTTTACCGGTCATTTTGGGCCGTGATATCAGTGGTGTTGTTGCGGCTGTTGGTTCTTCGGTTCGTTCAGTAAGTGTTGGAGATGAAGTTTTTGGTGCTTTGCATCCAACTGCTGTGAGGGGTACTTATGCTGATTATGCAATTCTTTCAGAAGAGGAATTAAGTGCTAAACCGGTGTCGTTTTCACATGTGGAAGCAAGTGCCATTCCTTTTGCTGCACTGACTGCATGGCGGGCTCTAAAAAGTACTGCTAGAATCACAGAGGGGCAACGGGTTTTAGTAATTGGTGGTGGAGGAGCTGTAGGTTATGCTGCGGTTCAGATTTCAGTTGTTTCAGGCTGCCATGTTGCAACTACTTGTGGAAGTCAAAGTATAGAAAAATTACTAGCAGCAGGTGCTGAGCAAGCAGTTGACTATACGACTGAGGGCATTGAATTCAAAATTAAGGGGAAATTTGACGCCGTATTGGATACAATTGGCGTGCCAGATACAGAAAGGATTGGCATTCATCTTTTGAATAGAGGTGGGCACTATATGACACTTCAGGGCGAGGCTGCATCATTGACTGATAGATATGGGGTAGTTCTCGGGCTTCCTTTTTCTACGGGTGTCTTGTTGCAGAAACAGCTCAAGTATAGGTTCTCTCATGGAATTGAATATTGGTGGACATACATGAGGGCGGATTCCGAAGGTTTAGAAGAGATCAGGAGGCTATGTGAAGCTGAGAAGCTGAAGATACCGGTCGAGAAAACGTTTCCTATCACCCAAGTAAGGGAGGCTCATGAAGCAAAGGACAAGAACCTCATTCCTGGTAAAGTGGTGCTAGAGTTTGATTGA 1098 46.9 MPALLRSPTSKFRLRSPFLISGFRTLVTTCRAVLLPHFGGPEVLQLRSDVPVPILKPHEVLVRSRAVSINPLDTRMRSGYGRSIFEPLLPVILGRDISGVVAAVGSSVRSVSVGDEVFGALHPTAVRGTYADYAILSEEELSAKPVSFSHVEASAIPFAALTAWRALKSTARITEGQRVLVIGGGGAVGYAAVQISVVSGCHVATTCGSQSIEKLLAAGAEQAVDYTTEGIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGVVLGLPFSTGVLLQKQLKYRFSHGIEYWWTYMRADSEGLEEIRRLCEAEKLKIPVEKTFPITQVREAHEAKDKNLIPGKVVLEFD* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10398115 10402437 - Chy6G116990.1 Chy06g01171 228880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01171 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 149 339 IPR036291 -
Chy06g01171 365 Gene3D - 156 334 - -
Chy06g01171 365 PANTHER PROTEIN AST1-RELATED 25 364 - -
Chy06g01171 365 Pfam Alcohol dehydrogenase GroES-like domain 57 119 IPR013154 -
Chy06g01171 365 Pfam Zinc-binding dehydrogenase 219 362 - -
Chy06g01171 365 SMART PKS_ER_names_mod 39 362 IPR020843 GO:0016491
Chy06g01171 365 PANTHER PROTEIN AST1-RELATED 25 364 - -
Chy06g01171 365 Gene3D - 38 362 - -
Chy06g01171 365 SUPERFAMILY GroES-like 27 180 IPR011032 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01171 K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial - csv:101207846 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01171 Chy-Chr6:10398115 Chy09g00330 Chy-Chr9:2865074 7.50E-32 dispersed
Chy06g01171 Chy-Chr6:10398115 Chy10g00906 Chy-Chr10:14757977 1.46E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g158 . . . . . . . . Cmo16g00442 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0174 Cone9ag0199 . . . . . . . . . . . . Bma07g01163 . . . . . Cma16g00410 . Car16g00374 Cpe14g00344 . . . . . . . . Cla05g00993 Cam05g1084 Cec05g1092 Cco05g1086 Clacu05g1078 Cmu05g1028 Cre05g1102 . . Chy06g01171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010183 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01171 Chy_Chr06 FPKM 6.846535 7.477673 9.365143 9.607875 5.145999 5.00514 5.929031 9.416414 11.094106 10.773913