Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01172 ATGGGTCGGCCTCCCAGCAATGGAGGCCCTGCCTTCCGCTTCACGGCTTCCGAGGTCGCGGAGATGGAAGCTATATTGCAAGGACACAACAATACCATGCCAGCTCGGGAAGTTCTTGTTGCACTTGCTGATAAGTTCAGTGAATCAGTAGAACGGAAAGGGAAGATTGCTGTGCAAATGAAGCAAGTTTGGAATTGGTTCCAGAATAGACGATATGCTATCAGAGCAAAGACATCCAAGGCTCCTGGAAAGTTAGCTGTCTCTCCAGTTGTCCAAATTGAGTCAACCCCTGTGAGAAATGTGCCTCAAACCGTAGTTGTTCCTGCTCCCGCACCAGTAGGCTCTGCAAAGGGTGCTCCAGAAAATCCATTGTCGGAATTTGAAGCCAAATCTGGGAGGGATGGTGCATGGTATGACGTTGCTACCTTTTTATCGCATAGATCGGTGGAAAGTGGTGACCCGGAAGTACTAGTAAGATTTTCTGGTTTTGGATCCGAGGAGGACGAGTGGGTTAATATACGAAGGAACATTAGACCTCGTTCTCTACCTTGTGAATCATCAGAATGTGTAGCGGTTCTTCCAGGCGATCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCACGTGCTTGATACACAACGAAGAAGACATGATGTACGAGGTTGTCGATGCAGGTTTTTGGTTCGTTATGATCATGATCAATCTGAGGAAATTGTTCAGTTGAGAAAGATTTGCCGTCGGCCTGAGACTGATTACCGGTTGCAACAGCTTCACGCCGTAAATGAAGCAGCATCCATTGAGCCCTCGAAGTCTGGCATGGATTCTGTACTGCTCAGTGGTCAGAGGATAAATTTCGAAACATCACAAAATCCACTTAGCAAGGATGCAGCCTTGGTTATACCAAATGCAGATCCTCATATAAATGCCCATGCCCAAACTAGTAATCAGGAAGCAAGGAATACTGAAACTAACACTGCTCCAATCACATTCAGCTCCGGTAATCACAATGCTCCAACCACATTCAACTCTGCTAATCTTGCAGGTAGCTCTGCATTCTCGAGTGGTATCGTGACAAACACTGTTTCTGGTGGGTCGGCTGACAATGTGTCTGATGGGAAGTTACTTAGTTGA 1149 46.56 MGRPPSNGGPAFRFTASEVAEMEAILQGHNNTMPAREVLVALADKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAKTSKAPGKLAVSPVVQIESTPVRNVPQTVVVPAPAPVGSAKGAPENPLSEFEAKSGRDGAWYDVATFLSHRSVESGDPEVLVRFSGFGSEEDEWVNIRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDYRLQQLHAVNEAASIEPSKSGMDSVLLSGQRINFETSQNPLSKDAALVIPNADPHINAHAQTSNQEARNTETNTAPITFSSGNHNAPTTFNSANLAGSSAFSSGIVTNTVSGGSADNVSDGKLLS* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10404667 10410021 - Chy6G117000.1 Chy06g01172 228881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01172 382 CDD homeodomain 13 75 IPR001356 GO:0003677
Chy06g01172 382 Gene3D - 10 84 - -
Chy06g01172 382 SMART HOX_1 7 81 IPR001356 GO:0003677
Chy06g01172 382 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 330 IPR039276 -
Chy06g01172 382 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Chy06g01172 382 MobiDBLite consensus disorder prediction 318 342 - -
Chy06g01172 382 Gene3D - 184 256 - -
Chy06g01172 382 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 330 - -
Chy06g01172 382 Pfam SAWADEE domain 126 251 IPR032001 GO:0003682
Chy06g01172 382 Gene3D - 124 183 - -
Chy06g01172 382 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01172 - - - cmo:103496064 729.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00161 Chy-Chr4:1427264 Chy06g01172 Chy-Chr6:10404667 2.14E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g157 . . . . . Bpe08g01000 . . Cmo16g00443 Cmo04g00593 . . . Car09g00555 . Cpe06g00484 . . . . . . . . . . . . . . . Cone6ag0175 Cone9ag0200 Cone14ag1044 Cone15ag1033 . . . . . . . . . . Bma07g01164 . . . Cmo09g00611 Cma04g00558 Cma16g00411 Car04g00528 Car16g00375 Cpe14g00345 Cpe01g00501 . . . . . . . Cla05g00992 Cam05g1083 Cec05g1091 Cco05g1085 Clacu05g1077 Cmu05g1027 Cre05g1101 . . Chy06g01172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006971 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 0 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18169 PF16719 SAWADEE 8.50E-40 CL0049 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01172 Chy_Chr06 FPKM 11.810224 13.298052 7.997474 8.146302 16.609104 16.221661 17.42057 14.239959 13.680417 14.768564
Chy06g01172 Chy_Chr00 FPKM 3.169323 2.5341 0.0 0.0 0.0 0.676057 0.0 1.491944 2.944382 1.459136
Chy06g01172 Chy_Chr00 FPKM 17.275742 19.040102 17.722422 18.482111 38.75275 37.801182 40.146935 21.695601 18.955021 20.431351