Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01174 ATGATCGCCTCCGGCACCGACATCTCCTCTTCCTTCGGCGTCGCCGGCGTCGGTGGCGGCCTCTTCTCCCGTTTGATGGCCACTACACGCCCCAATGCAGCCGTCGCCTTCACCGCCTTGGCCGGCCTCGCTGTGGTCGCCGTTCTCTTCTACTCCGCCAGTAGGGGGCGCCTTAAATCACCTTGGTCACGCAAGAAAAGGAAGCACGCACTTTCACCCCAACAATGGAGGAGTTTGTTTACGCCAGATGGGAAACTAAGAGATGGTGGCATTAAGTTTTTGAAAAAAGTTCGCAGTGGAGGTGTAGATCCAAGTATTAGAACTGAGGTCTGGCCGTTCCTTCTTGGAGTCTATGACTTGAGCAGTACTGAAGAAGAAAGAGATGCTGTAAGAGTACAGAAGAGGAAAGAATATGAAAAACTTCGCAAACAATGCCAATCTTTACTGAAGTTTGGGACTGAGAGTATAAAGTTGGATGATGATGAGATGAACTGCAACAAGGAGGGGGACACTCAGCATGTTGCTCATGGTGATGCCTCTCCTACTTTGGAAGATGTGGTTAGTGCCAGAGAATCTATTTCTAGCGACGAAAAGGGCTCAAACTTAAGATACTTGGATGGAACCTCAGGTGTTTTGTTGGAAAGGAATGACAGTTCTAGACAGATGGCTATCGCTGATGCTGATGCTTCTGCTCTAAATACCGAATCATCTGATTCAGATTCTTCTGAGGATCCTGAAGTTAGTCAAACATTCCCTTCCTCAGATGGTAGAGAAGATAATGATCCTGATTTCAATTCCAAAAATTCATCTCCCTTGGTAACAGAGGTTACATCCAAATTTCGCAATAATGAAGACTTTACAACATGGCAGCGGATCATTCGCCTTGATGCGGTACGTGCAAATGCAGAATGGATAGCCTACGCACCATCCCTAGCAGCAGTTTCGGATGATAAGGCTAGACATTTTGCCGAGATTGTTGGTTTGAAAGATTACGATCACCTAGAGTCCTGTAGGATCTTTCATGCTGCTAGATTAGTGACTATTCTTGAAGCATATGCTCTATATGACCCTGAAATTGGGTATTGCCAAGGAATGAGTGATCTGCTTTCTCCTATAATCACTGTGATAACTGAAGATCACGAGGCATTTTGGTGCTTTGTGGGCTTCATGCGGAAAGCTCGACATAACTTTAGGCTTGATGAGGTTGGGATTCGAAAGCAACTGAACATTGTATCTAGAATCATTAAATTCAAGGACTCTCACCTTTACAGACACCTACAAGACCTTGAAGCGGAGGATTGCTTTTTCGTTTATAGGATGGTTGTGGTACTGTTTAGAAGGGAATTAACATTTGAACAGACGTTGTGCCTTTGGGAGGTGATGTGGGCTGATCAGGCAGCTATTAGAGCTGGTGTAGGTAAATCAGCTTGGAGCAGAATTAGGCAACGAGCCCCACCCACGGAGGACTTACTGCTCTATGCAATTGCTGCCTCAGTTTTACAGAAGAGGAAATTGATCATAGAAAAATACAACAGCATGGACGAAATTATTAGGGAGTGCAACAGCATGGCCGGGCAACTTGATGTATGGAAACTATTGGACGATGCTCATGATTTGGTGGTGACCCTCCATGAGAAGATCGAAACTTCACTTAATGAGTAA 1662 45.31 MIASGTDISSSFGVAGVGGGLFSRLMATTRPNAAVAFTALAGLAVVAVLFYSASRGRLKSPWSRKKRKHALSPQQWRSLFTPDGKLRDGGIKFLKKVRSGGVDPSIRTEVWPFLLGVYDLSSTEEERDAVRVQKRKEYEKLRKQCQSLLKFGTESIKLDDDEMNCNKEGDTQHVAHGDASPTLEDVVSARESISSDEKGSNLRYLDGTSGVLLERNDSSRQMAIADADASALNTESSDSDSSEDPEVSQTFPSSDGREDNDPDFNSKNSSPLVTEVTSKFRNNEDFTTWQRIIRLDAVRANAEWIAYAPSLAAVSDDKARHFAEIVGLKDYDHLESCRIFHAARLVTILEAYALYDPEIGYCQGMSDLLSPIITVITEDHEAFWCFVGFMRKARHNFRLDEVGIRKQLNIVSRIIKFKDSHLYRHLQDLEAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGVGKSAWSRIRQRAPPTEDLLLYAIAASVLQKRKLIIEKYNSMDEIIRECNSMAGQLDVWKLLDDAHDLVVTLHEKIETSLNE* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10423073 10426926 + Chy6G117020.1 Chy06g01174 228883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01174 553 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 20 547 - -
Chy06g01174 553 Gene3D - 401 548 - -
Chy06g01174 553 MobiDBLite consensus disorder prediction 187 201 - -
Chy06g01174 553 MobiDBLite consensus disorder prediction 230 255 - -
Chy06g01174 553 ProSiteProfiles TBC/rab GAP domain profile. 101 465 IPR000195 -
Chy06g01174 553 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE ISOFORM X1 20 547 - -
Chy06g01174 553 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 84 425 IPR035969 -
Chy06g01174 553 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 402 539 IPR035969 -
Chy06g01174 553 Pfam Rab-GTPase-TBC domain 344 464 IPR000195 -
Chy06g01174 553 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 267 397 - -
Chy06g01174 553 MobiDBLite consensus disorder prediction 228 271 - -
Chy06g01174 553 SMART tbc_4 98 510 IPR000195 -
Chy06g01174 553 MobiDBLite consensus disorder prediction 162 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01174 - - - csv:101220060 998.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g01174 Chy09g01459 CCT
Chy06g01174 Chy09g01459 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01174 Chy-Chr6:10423073 Chy07g01523 Chy-Chr7:19472435 1.56E-13 dispersed
Chy01g01426 Chy-Chr1:19760688 Chy06g01174 Chy-Chr6:10423073 8.74E-14 transposed
Chy05g00633 Chy-Chr5:7811210 Chy06g01174 Chy-Chr6:10423073 1.27E-13 transposed
Chy05g01294 Chy-Chr5:17175676 Chy06g01174 Chy-Chr6:10423073 1.42E-09 transposed
Chy06g01174 Chy-Chr6:10423073 Chy09g01459 Chy-Chr9:16078515 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g990 . . Bda05g00136 Bda07g01953 . . Bma10g01314 Bma14g02024 Cmo16g00032 Cmo18g01368 Cma02g01140 Cma15g01009 Car02g00945 Car15g00941 . Cpe05g00583 Cpe14g00021 Bhi01g01525 . . . Hepe07g0036 Mch10g0034 . Cla01g00022 Cam01g0021 Cec01g0019 Cco01g0023 Clacu01g0022 Cmu01g0021 Cre09g2486 Cone1ag1009 Cone5ag0717 . . . Csa05g00024 Chy09g01459 Cme06g01172 Blo07g00321 Blo09g00006 . . . . . . . Cmo02g01172 Cmo15g01072 Cma16g00027 Cma18g01336 Car16g00024 Car18g01251 Cpe09g00012 Cpe13g00328 Bhi12g00683 . . . Hepe06g0818 . . Cla05g00990 Cam05g1081 Cec05g1089 Cco05g1083 Clacu05g1075 Cmu05g1025 Cre05g1099 Lsi09g00002 Csa03g01962 Chy06g01174 Cme09g02008
Vvi19g106 . . . . Bpe09g00261 . . Bma13g00928 Cmo16g00475 Cmo04g00614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00732 . . . . . . . . . Cma04g00575 Cma16g00440 Car04g00544 . Cpe14g00370 Cpe01g00519 . . . . . . . . . . . . . . . Csa04g00806 Chy06g01174 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001494 2 4 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01174 Chy_Chr06 FPKM 25.814489 30.9715 20.440504 21.446228 23.690207 22.115168 25.273621 14.041249 15.527372 15.432386
Chy06g01174 Chy_Chr00 FPKM 35.400459 41.061371 23.62064 23.156925 28.034672 26.517078 29.380638 16.834173 17.964851 18.01516