Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01177 ATGAAGAATTTGGATCAAGGTTTGTTGATGTGTGTACCTTGCATTGGATGGAAAGCGTTTGAGTCATGCTTGTTGGGAGATGGATGGATGAGTGGGATTGCGTGTGACTCTTCGTCTTCTATTCTTGTCAGATGTGAGAGAGTGGTGGTGAATGAGGTTAGTTGCCTTATGGAGGAAATTGTGTCATTGGCTATTGCTGCTACCACCCGTGTTGTGAGTATGTCGGACGCTTATTGGAGGTATACCGACTCACAGCAGCAGCCTCCGTCCTCGGTTCCGCCCGTCGTCGGCAAGCGCCCTCGCGTCGATTACGATACCTCTGGTCTTCACGAGCTGCCCAACTATTACCCTCGTCAAGATGATAGGCCTGTTCTCCAAGGAATTAAAAGTGTTGATTCTATCAATGAGTCCTATGAACGTTACCTACGCACCTCGCAAATTTCATCTTATGGTGGACAGTCTGCTAGACCTGTTGGTGGGGGCATTCCTGGTCATCCGATGAATGATCCACCTATCTTGGGGCTTGGGGGGGTGGTTTCAGGGGCAAATGTTAATGATAGAAGTACGAGCTTTGGAGGTGGGAGGCCTAATATACCCCTGCCACCTGATGCTTCTAATACACTATTTGTGGAAGGCTTGCCTTCCAGCTGTACCCGGCGTGAAGTAGCTCACATATTTCGCCCTTTTGTTGGGTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAGTGCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCCATGGATGCCTTACAAGGAATTTGCTTATCATTTCTGATCCATCTTCAGATGGAAAAATTGCCAACCGAAATCTGCTTCAAGATTTTCTGTTTCTTGGATTCCCAGAACCTTGCAACCGCACTTCAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTGTGGTCAAATTTATTCAAGGAGAGGTGGGGGGAAGACCATGCTGCATTTTATCACCCAATTGGTTCAAAGTCGTGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTATCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGTTCAAGAAGACAAAAGAATGGACAGACCAGTTTTCTTCCTTTGAGTTCGAAAAGAGAGTTCCTATCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCCACAGATGCAAAGCGTAGCAGGAGGAAGCTCCAAAAGATGGCTGCTTTTGCCTCACTACCCCTAACTTCATCTTCTTTACATCCAGTTGTCCAATTCTCACCTCTTGTATTCTCCTCAAAAGTTGTATATGACCCAAGTTCCTATTGCTTCACAGTCGGATCAATCAGATATGGAAACCAAAAATTTTCCTCTCAGACCAACCCAAGGAGTTTGATAATTCTTGGGGCAGCAACTAAACAAGCAAAAACACCAGCTGAAGAGGATTGGAAGGTGAAGAGGGAACTTCTGCTGCAGAAAAGGGTAAGGAGTGTTGATGCTAATGAAGCTCTGCGCCTTCAAAAGGAAAACAACTTTGTGATTCTTGATGTCAGGCCAGAAGCAGAATTCAAAGAGGGCCATCCACCAGGTGCCATTAATGTGCAAATCTACAGGCTTATAAAGGAGTGGACAGCGTGGGACATAGCCAGGAGAGCTGCATTTGCATTTTTTGGCATCTTTTCGGGTACCGAAGAAAACCCAGAATTCTTGCAAAGTGTAGAATCTAAAATTGATAAAGATGCCAAAATAATAGTAGCATGCTCATCAGGTGGAACAATGAAACCTACCCAGAATCTTCCAGAAGGTCAACAATCAAGGTCACTGATAGCAGCCTACTTGTTGGTTCTCAATGGGTACGCCAACGTATTTCACTTAGAAGGTGGTCTCTACAATTGGTTCAAAGAAGGATTGCCTGTAGTTTCAGAAGAATAA 2058 45.09 MKNLDQGLLMCVPCIGWKAFESCLLGDGWMSGIACDSSSSILVRCERVVVNEVSCLMEEIVSLAIAATTRVVSMSDAYWRYTDSQQQPPSSVPPVVGKRPRVDYDTSGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRTSQISSYGGQSARPVGGGIPGHPMNDPPILGLGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRSAGRDPVVLGFVDFVSPAHAATAMDALQGICLSFLIHLQMEKLPTEICFKIFCFLDSQNLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPIGSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRRKLQKMAAFASLPLTSSSLHPVVQFSPLVFSSKVVYDPSSYCFTVGSIRYGNQKFSSQTNPRSLIILGAATKQAKTPAEEDWKVKRELLLQKRVRSVDANEALRLQKENNFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESKIDKDAKIIVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYANVFHLEGGLYNWFKEGLPVVSEE* 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10441553 10454102 - Chy6G117050.1 Chy06g01177 228886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01177 685 SMART rrm1_1 207 282 IPR000504 GO:0003723
Chy06g01177 685 ProSiteProfiles Rhodanese domain profile. 550 683 IPR001763 -
Chy06g01177 685 ProSiteProfiles F-box domain profile. 280 326 IPR001810 GO:0005515
Chy06g01177 685 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 459 685 IPR043186 -
Chy06g01177 685 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 535 683 IPR036873 -
Chy06g01177 685 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 275 IPR000504 GO:0003723
Chy06g01177 685 SUPERFAMILY RNA-binding domain, RBD 200 274 IPR035979 GO:0003676
Chy06g01177 685 Gene3D - 202 282 IPR012677 -
Chy06g01177 685 SMART fbox_2 286 326 IPR001810 GO:0005515
Chy06g01177 685 Pfam Rhodanese-like domain 542 675 IPR001763 -
Chy06g01177 685 CDD RRM_RBPMS_like 206 273 - -
Chy06g01177 685 Gene3D - 524 681 IPR036873 -
Chy06g01177 685 CDD RHOD 544 674 - -
Chy06g01177 685 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC 459 685 - -
Chy06g01177 685 SUPERFAMILY F-box domain 283 355 IPR036047 GO:0005515
Chy06g01177 685 Gene3D - 283 360 - -
Chy06g01177 685 SMART rhod_4 540 680 IPR001763 -
Chy06g01177 685 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 286 IPR000504 GO:0003723
Chy06g01177 685 Pfam F-box-like 284 327 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01177 - - - csv:101219342 460.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00530 Chy-Chr2:3195076 Chy06g01177 Chy-Chr6:10441553 1.53E-13 dispersed
Chy03g00541 Chy-Chr3:7600969 Chy06g01177 Chy-Chr6:10441553 1.58E-42 dispersed
Chy06g01177 Chy-Chr6:10441553 Chy07g00260 Chy-Chr7:2051755 2.05E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g999 . . . Bda07g01947 Bpe03g00202 . . . Cmo16g00037 . . . . . Sed07g0875 . . Bhi01g01518 Tan01g0062 Cmetu06g0118 . Hepe07g0040 Mch10g0038 . . . . . . . . . . . . . . . Cme06g01168 . . . . . . . . . . . Cma16g00032 . Car16g00030 . . . . . . . . . . . . . . . . . . Csa03g01966 Chy06g01177 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01104 . 83 400 Sulfurtransferasese/Rhodanese AT1G79230 75.5 2.1e-146 515.4
Chy06g01104 . 83 347 Sulfurtransferasese/Rhodanese AT1G16460 73.6 3.3e-113 404.8
Chy12g01465 . 36 312 Sulfurtransferasese/Rhodanese AT5G23060 64.8 1.2e-85 313.5
Chy06g00108 . 1 443 Sulfurtransferasese/Rhodanese AT4G01050 51.9 2.2e-118 422.9
Chy12g00613 . 6 610 Sulfurtransferasese/Rhodanese AT1G09280 63.6 3.1e-225 778.1
Chy10g00299 . 22 379 Sulfurtransferasese/Rhodanese AT2G40760 74.1 2.1e-155 545.8
Chy04g01560 . 84 412 Sulfurtransferasese/Rhodanese AT1G17850 66.6 3.5e-136 481.9
Chy08g00021 . 41 247 Sulfurtransferasese/Rhodanese AT2G42220 74.9 1.5e-85 312.8
Chy04g02254 . 13 217 Sulfurtransferasese/Rhodanese AT3G08920 58.0 1.3e-64 243.0
Chy02g02624 . 1 296 Sulfurtransferasese/Rhodanese AT4G24750 68.4 6.1e-113 404.1
Chy05g00171 . 67 293 Sulfurtransferasese/Rhodanese AT5G19370 66.7 5.5e-85 311.2
Chy06g01835 . 731 1085 Sulfurtransferasese/Rhodanese AT5G55130 72.1 2.2e-149 525.4
Chy06g01177 . 505 685 Sulfurtransferasese/Rhodanese AT4G27700 80.1 2.0e-79 292.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01177 Chy_Chr06 FPKM 0.747093 0.451525 0.178677 0.156292 3.128516 2.367007 3.43616 0.015287 0.0 0.122846