Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01184 ATGGGGAAGGCGGTGGTATATGTTCTTACAGCCACCGTCTTCGCTCTCTTCTTCCTAATTTCTCCCTCCAATTTCCACAATCGGAGCCATCAACAACCAACTCGTCGTCTAGGATTCAAATTCCCAAACCCTACTTTTGATCCTCTTGTTACGGAAATGGAGAGATTAGCAGCAGAGGAACGTGGTGAAAATGCGATTGGAGTGGAAAATCAAAACCATAAGATCACCGATTCTTATAGAAATTACTACGATGAAGGGAGATTGAACATTTCGTTGAGGTTACTTGTGTTGTTTCCTTTGCTGGATAATTCGCCTAAAGATGGGGTTATCAGTTACGAGGAGTTGAGTGATTGGATTAATGGGCAAGCTATTGAAAGATTGAATTATAGAACGACGAAACAATTGGAGTTCTACGATAAGAATGGAGATGACGCCATTTCATTCCATGAATATCTGCCGCAGTTCACTGAGGAAGATATTGCAAGAAATGAAACGGGATATGGAGAAGCTGGATGGTGGAGAAAGCAATTCACGAATGCGGATGTTGACCACAATGGCTTACTATATTTTGATGAACTGAAAGATTTCCTTCACCCAGAAGATAGCAGCAATTACCGAATACAAAACTGGCTGTTGGCACAGAAAATGAAGCGCATGGACAATGACAAAGATGGAAAGCTCAATTTTGATGAATTCCTTCACCATACATATGATATATACAAGAACTATATTGAATTTGAAACTCAAGGCGAAGATGTACCGAGCGCTGAAGAGAAGTTTGATGAGCTTGATCTCGACGAGGATGAAGTATTGTCAACGGAAGAATTAAGACCATTGTTCCAGTATCTTCATCCTGGAGAAGTGTCTTATGCTCAACATTACACAAGTCATTTGATTAATGAGGCTGATGACAATAAAGATGGGTACTTAACAATTGATGAAATGCTTAATCATGAGTATGTTTTCTACAGCACAGTATATGAAAATCAGAATGGAGATTATGAAGATGATTACCATGATGAACTTTGA 1029 39.36 MGKAVVYVLTATVFALFFLISPSNFHNRSHQQPTRRLGFKFPNPTFDPLVTEMERLAAEERGENAIGVENQNHKITDSYRNYYDEGRLNISLRLLVLFPLLDNSPKDGVISYEELSDWINGQAIERLNYRTTKQLEFYDKNGDDAISFHEYLPQFTEEDIARNETGYGEAGWWRKQFTNADVDHNGLLYFDELKDFLHPEDSSNYRIQNWLLAQKMKRMDNDKDGKLNFDEFLHHTYDIYKNYIEFETQGEDVPSAEEKFDELDLDEDEVLSTEELRPLFQYLHPGEVSYAQHYTSHLINEADDNKDGYLTIDEMLNHEYVFYSTVYENQNGDYEDDYHDEL* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10588337 10591753 + Chy6G117120.1 Chy06g01184 228893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01184 342 Gene3D - 92 153 - -
Chy06g01184 342 ProSiteProfiles EF-hand calcium-binding domain profile. 212 242 IPR002048 GO:0005509
Chy06g01184 342 PANTHER RETICULOCALBIN 1 342 - -
Chy06g01184 342 Pfam Secreted protein acidic and rich in cysteine Ca binding region 205 315 IPR019577 GO:0005509
Chy06g01184 342 SUPERFAMILY EF-hand 170 333 IPR011992 -
Chy06g01184 342 SUPERFAMILY EF-hand 93 153 IPR011992 -
Chy06g01184 342 SMART efh_1 294 322 IPR002048 GO:0005509
Chy06g01184 342 SMART efh_1 211 239 IPR002048 GO:0005509
Chy06g01184 342 SMART efh_1 172 200 IPR002048 GO:0005509
Chy06g01184 342 SMART efh_1 255 283 IPR002048 GO:0005509
Chy06g01184 342 SMART efh_1 130 158 IPR002048 GO:0005509
Chy06g01184 342 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 342 - -
Chy06g01184 342 ProSiteProfiles EF-hand calcium-binding domain profile. 251 286 IPR002048 GO:0005509
Chy06g01184 342 ProSitePatterns EF-hand calcium-binding domain. 303 315 IPR018247 -
Chy06g01184 342 ProSitePatterns EF-hand calcium-binding domain. 220 232 IPR018247 -
Chy06g01184 342 Gene3D - 154 235 - -
Chy06g01184 342 Gene3D - 236 320 - -
Chy06g01184 342 ProSitePatterns EF-hand calcium-binding domain. 139 151 IPR018247 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01184 K23901 CALU; calumenin - csv:101207354 682.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01184 Chy-Chr6:10588337 Chy10g00665 Chy-Chr10:13108683 6.08E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1018 . Blo15g00083 . . . Bpe07g01020 . . . . . . . . Sed07g2373 . . Bhi01g01509 Tan01g0073 Cmetu06g2632 . Hepe07g0046 Mch10g0046 . . . . . . . . Cone1ag0997 . . . . . . Cme06g01158 . . . . . . . Bma12g01216 . . . . . . Car18g01232 . . . . . . . . . Cla05g00982 Cam05g1073 Cec05g1080 Cco05g1072 Clacu05g1067 Cmu05g1018 Cre05g1092 . Csa03g01971 Chy06g01184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012485 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01184 Chy_Chr06 FPKM 0.528733 0.763739 0.654293 0.815597 0.805541 0.818008 0.711676 3.692596 3.375426 3.583099