Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01198 ATGATGAAACTGGACGAGTTTGACAATTATAAAGTACCTAAAGATGAAATGCAAGATGTAGAGCTCTCTCATGAAGATCCAATTAATCTTCATTCCAAGAAACTTCAAGATAATTTGCAAACAATGGGGATGAAAATACAGGTGCATGAGGACAACATAAGGTTTCTGAAGACTTTGAAAGACAAATTAGTTGATTCCATCATTGATCTACAAGTTATACTAGGAAAGTATCATGCTTCTAATACACCTAAGATTGAGAACAAGGATGGTTCCGATACTCAAAGTGAAGATAAGGCATCATATCAGAAAGAGATATTTCGACAGGAAAATACTGCTGCTAGCATCTTGTGCCACTCAAAAACTAATCCAAAGATGCTGGCTTCTGATCCTACATTGAGTGATGATGTGCTTGGTGTTGTTGCTGAGCTAGGACATGTGGAGGACAAAAACCTTAGTAGCCTTTTATCAGAGTACCTAGGAGCAGAGACCATGTTGGCTATTGTCTGCAAGACTTACAATGGAGTCAAATCTCTGGAAAAGTATGACACGGAAGGATGCATAAATAAATCATCCGGGCTTCATGGATTTGGCACTTCACTCGGGAAAACTTTAGAGGGACGATTCAATGTCATCTCTCTCGAAACATTAAGATCATATTCTGGTGAATTTGTGGCCGATGATCCGCAAAGAAGGCTTGATATTCCAAAGCCAAGATTGCCTAATGGAGACTGTCCAGCCGGTTTTCTTGGTTATGCTGTTAATATGATTGACATAGACAGAACACACTTGTTTTTTCTCACAGCTAGTGGATATGGTCTTAGAGAGACTCTATTTTATTCTCTATTTTTCTGCCTGCAAATCTATAAAACTAGGACAGAAATGTTGCAAGCTGTTCCTTGCATAACCGACGGAGCGCTTTCTTTGGATGGCGGGATTATCAAGAGGAGTGGATTGTTTTGTCTTGGCAATAGGGGCGACACGAAGATGACCTTTTCCAAGACCTCAATAAATTCAAGCCTATCTGACCATTACATGGAATCTGAAAGACAAATGAAAGAAATGAAATGGAAAAAGGAAAAAATGCTTGAAGATATGAGGAGAGAACGGGCGCTGCTAGATAGCTTGAAGCTCAACTTCGAAAAAAAGAAGGTAGAGTTTGTGCAGTTTCTAGCAGAAGCTGCTTCTCGGGGGGGGTTTGAAGGAAATGGGAATATTTTGCAATACCAAGTTTGTGTTGTGTATCACGCTTCCTCTGACAGCTCTATGATGGTTGCCATTTCTTTCATCCTCTATCTCGCTTACTTTGCTCTATTCCTTCCTGTTTTAGGGGCCATTTATATGTATGACAAAATGGTGGATGTATTCTGTATGTCTACTTCGACCCTGGATTCAAAGTTCGATTCTCAGCCAAGCTCGAGAGTATATGCCTTAACCGTTGTTTTACAATTGCAATCCGGTAATGTCTAA 1467 39.88 MMKLDEFDNYKVPKDEMQDVELSHEDPINLHSKKLQDNLQTMGMKIQVHEDNIRFLKTLKDKLVDSIIDLQVILGKYHASNTPKIENKDGSDTQSEDKASYQKEIFRQENTAASILCHSKTNPKMLASDPTLSDDVLGVVAELGHVEDKNLSSLLSEYLGAETMLAIVCKTYNGVKSLEKYDTEGCINKSSGLHGFGTSLGKTLEGRFNVISLETLRSYSGEFVADDPQRRLDIPKPRLPNGDCPAGFLGYAVNMIDIDRTHLFFLTASGYGLRETLFYSLFFCLQIYKTRTEMLQAVPCITDGALSLDGGIIKRSGLFCLGNRGDTKMTFSKTSINSSLSDHYMESERQMKEMKWKKEKMLEDMRRERALLDSLKLNFEKKKVEFVQFLAEAASRGGFEGNGNILQYQVCVVYHASSDSSMMVAISFILYLAYFALFLPVLGAIYMYDKMVDVFCMSTSTLDSKFDSQPSSRVYALTVVLQLQSGNV* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10672114 10675440 + Chy6G117260.1 Chy06g01198 228907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01198 488 Coils Coil 344 378 - -
Chy06g01198 488 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 25 395 - -
Chy06g01198 488 PANTHER PROTEIN DEFECTIVE IN MERISTEM SILENCING 3 25 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01198 - - - csv:101206394 726.087
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g01198 Chy09g01439 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00110 Chy-Chr12:1227917 Chy06g01198 Chy-Chr6:10672114 9.19E-61 transposed
Chy06g01198 Chy-Chr6:10672114 Chy09g01439 Chy-Chr9:15959023 1.79E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1039 . . . Bda07g01934 Bpe03g00190 . . . . . . . Car02g00928 . Sed01g3490 Cpe05g00599 . Bhi01g01492 Tan01g0092 Cmetu06g0095 Lac11g0158 Hepe07g0059 Mch10g0057 . Cla01g00042 Cam01g0040 Cec01g0039 Cco01g0041 Clacu01g0042 Cmu01g0040 Cre09g2467 . Cone5ag0690 . . . Csa05g00048 Chy09g01439 . . Blo09g00026 . . . . . . . Cmo02g01147 . Cma16g00044 . . . . Cpe13g00317 . . . . . . . . . . . . . . Lsi09g00021 Csa03g01983 Chy06g01198 Cme09g01985
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001858 1 3 1 0 1 2 3 2 2 3 2 2 1 2 2 2 2 2 3 2 3 2 2 2 2 2 2 11 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01198 Chy_Chr06 FPKM 0.743488 1.359667 3.262926 3.274754 0.817917 0.948955 0.730806 13.781754 12.979428 13.159761