Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01208 ATGGGCTACGGCAGGCTCAACGAAACCGACCCCGGCGGCCCTTCCGACCCTTCCCCCGCCGCCCCTGCCTTCCAACTCTCCCCCCACCATCCCACTCCCAATCGGCGGACCACACGCCTTCTCCTTATATCCTTCCTCTCTCTCCTTCTCATCGTCGCCGCCGCCGTCTCCGCTACCTTCCTCGTCGGACTACGAACCGCCTCCCCTGCTCGATCCGACCCGAATCTCCCTCGTAAACCCACTCAGGCAATTTCCAAAGCTTGTAGCCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGCTCTCTCAACGCCAACGAACAAGATCTCGTTCACATTTCCTTCAACATCACTCTCCAACATCTCAACAAAGCCCTCTATTCATCCTCTGAGATTTCCTCTCTTCAAATGGATCTCCGCGTTCGTTCCGCTTACGATGCTTGTCTCGAACTCCTCGACGACTCCATCGATGCTGTTTCTCGTTCCTTGCAATCCGTCGCACCGTCTTCCTCCTCCTCCACTCCGCAGCGGCTCGGCTCATCTGAAGATATCATTACTTGGCTTAGCGCTGCCCTTACTAATCAAGACACATGTACGGATGGATTCTCTGAACTCTCCGGTACTGTGAAAAACCAAATGGCAGATAAACTTCACAATCTGTCTGAACTTGTTAGTAATTGCTTGGCGCTGTTTTCCGGTAGTGAAACGAGCGATTTCGCGGGAGTGCCGATTCAGAACAAACGACGGTTGATGAAGGAGGAGGGAGAGAATGAGGATAGTTCCGGTAACTTCCCGAGATGGATGAACCGGAGAGAGAGAAGGTTACTGACGTTGCCGGTGGGAGTGTTACAGGCGGATATTGTGGTTTCTCAGAACGGTAACGGAACGGTGACAACGATCGCCGAAGCGATAAAAAAGGCGCCGCAGTACAGTAGTAGAAGGACGATCATTTACGTGATGGCAGGAAGGTACGAAGAGAAAAACTTGAAGGTTGGGAGGAAGAAAACTAACCTCATGTTTGTTGGAGATGGGAAGGGTAAAACTGTCATTTCGGGTTCTAAAAGTATCTTTGATAATGTGACAACTTTTCACACGGCATCGTTTGCGGCCACCGGCGCCGGAATAATCTTGAGGGACATGACATTTGAGAATTGGGCCGGACCGGGACGGCATCAAGCAGTTGCGCTTCGAGTCGGCGCCGACCATGCAGTGGTCTACCGCTGCAACATAATCGGGTATCAAGATACTCTCTACGTCCATTCGAACCGTCAATTCTACAGAGAATGCGACATTTACGGGACAGTGGATTTCATCTTCGGCAACGCGGCTGTGGTGTTTCAAAACTGCAGCATTTACGCTCGTAAGGCAATGGCACTTCAAAAGAACACAATCACCGCCCAAAACCGGAAAGACCCGAATCAAAACACCGGAATTTCAATCCACGCGTGCCGGATTTTGGCCACCTCCGATCTACAATCGTCCAACAGCTCCAACCCGACGTATCTGGGGCGTCCGTGGAAATTATACTCAAGAACGGTGGTTATGTTATCGTACATAGGGAACCACGTTCACCCACGCGGTTGGTTGGAGTGGAACGCCACGTTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGACCGGGTGGGGCGGTGGGGCAGAGGGTGACGTGGCCTGGGTATCGAGTGATAACGTCCACGGTGGAAGCGAGTAAGTTCACGGTGGCTCAGTTTATTTACGGTTCGTCGTGGTTGCCGTCCACCGGAGTTGCATTTCTGGGAGGGCTAAATGTGTAA 1818 52.09 MGYGRLNETDPGGPSDPSPAAPAFQLSPHHPTPNRRTTRLLLISFLSLLLIVAAAVSATFLVGLRTASPARSDPNLPRKPTQAISKACSRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYSSSEISSLQMDLRVRSAYDACLELLDDSIDAVSRSLQSVAPSSSSSTPQRLGSSEDIITWLSAALTNQDTCTDGFSELSGTVKNQMADKLHNLSELVSNCLALFSGSETSDFAGVPIQNKRRLMKEEGENEDSSGNFPRWMNRRERRLLTLPVGVLQADIVVSQNGNGTVTTIAEAIKKAPQYSSRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGSKSIFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILATSDLQSSNSSNPTYLGRPWKLYSRTVVMLSYIGNHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV* 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10749051 10751917 - Chy6G117360.1 Chy06g01208 228917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01208 605 Pfam Pectinesterase 291 588 IPR000070 GO:0030599|GO:0042545
Chy06g01208 605 Gene3D - 286 603 IPR012334 -
Chy06g01208 605 Pfam Plant invertase/pectin methylesterase inhibitor 83 235 IPR006501 GO:0004857
Chy06g01208 605 PANTHER PECTINESTERASE 30 603 - -
Chy06g01208 605 SUPERFAMILY Pectin lyase-like 288 601 IPR011050 -
Chy06g01208 605 CDD PMEI-like_3 87 237 - -
Chy06g01208 605 SMART PMEI_2 79 235 IPR006501 GO:0004857
Chy06g01208 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 238 IPR035513 -
Chy06g01208 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 237 IPR035513 -
Chy06g01208 605 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 236 IPR006501 GO:0004857
Chy06g01208 605 MobiDBLite consensus disorder prediction 1 32 - -
Chy06g01208 605 ProSitePatterns Pectinesterase signature 2. 436 445 IPR033131 -
Chy06g01208 605 PANTHER PECTINESTERASE 30 603 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g01208 Chy09g01437 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01719 Chy-Chr1:22981477 Chy06g01208 Chy-Chr6:10749051 1.04E-169 dispersed
Chy06g01208 Chy-Chr6:10749051 Chy06g00857 Chy-Chr6:6182906 7.74E-144 dispersed
Chy09g01123 Chy-Chr9:13496541 Chy06g01208 Chy-Chr6:10749051 7.55E-12 dispersed
Chy06g02299 Chy-Chr6:26925991 Chy06g01208 Chy-Chr6:10749051 3.50E-151 transposed
Chy08g01045 Chy-Chr8:17543352 Chy06g01208 Chy-Chr6:10749051 1.14E-146 transposed
Chy06g01208 Chy-Chr6:10749051 Chy09g01437 Chy-Chr9:15944062 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01208 - - csv:101214987 1130.93