Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy06g01210 | ATGCCGAATCTGAAACGGTGTAAACACGGCGACTCGGTTGGTGAAGACGATGAAACCTCGGCGGCGAGGAAGAAAAGAAAGCTAAACGGTTATTACCCACTTAATCTTCTTGGCGACGTTGCGGCTGGAATCATCCCTTTGAAGCTTCACGACATTCTTGGCACCAACAACAAAGGGATTACAGCGTCGTGGTGTACACAGATTTCTTGTTCCGCCATGGAGATGGAGTCTAAGTCGAATAGCCGGGAATCATTAGCAAGAGAAGCTACGAAGAGACCGGCCGAGGTCCCACGACCGCCGCTTGTGAGGACTTCAAGAGGACGGGTTCAGGTACTTCCTTCTCGGTTTAACGATTCTGTTATTGAGAATTGGAGGAAAGACAGCAAGACTAGCTTGCGCGATTACAGTCCCGATGAGGAATTCAAATGTAAGAAGGAGAAATTCAGTTTCAAGACTCCTAGAATTTGTAATGGGACTGCCAAGAAAGTACAAACCTGTGATAAATTGTTTGTCAAGTGTCCAGCATTGTGTGAAGAGGAGGAAGATGAACCAGCGGGTATGGAGTTCAAGAATTTCGACTTCAGGAAATATTCGAGCTCCCGCAGTTCATTAACCTCCGTACACGAGACTGTTGTTGAAGATGAGAAGTTTCCAGTTGATGTAATTGGTGAAGATGGAAGCCCAAAGGAAACTAAATCAAAGGATGGTTTATATGGACCTGAAGACTTCTATTCAGGTGATATTGTATGGGCAAAGGCAGGGAGGAAAGAACCTTTTTGGCCTGCCATTGTCATTGATCCTATAACTCAAGCACCTGAATTAGTTTTGAGAGCTTGTGTTCCAGATGCAGCTTGCATTATGTTCTTTGGAGGGAACGAAAATCAAAGGGATTATGCATGGGTGAGGCGGGGGATGATCTTTCCATTTATGGATTTTGTAGACAGGTTCCAAGGACAGCCAGAATTGGATAGATGCAAATCCAATGAGTTCCAGATTGCAATAGAGGAAGCATTTCTGGCAGAACGTGGGTTCACAGAGAAATTGATTGCAGATATTAATATGGCAGCGGGAAATACGATTGCTGATGAATTTCTTTTCCGAGGAACTCAGGAAGCTACTGGTTCTAACCAGGATCCTGACTGCCATTCTCCTCCTAAGCGGACTAGTTGCATTATGGAAATGTATGCAAAGAAGAAAGATGGACGGCATTGTGAGGGATGTGGCCAAGCACTTCCTGTTAAATTGGTGAAGAAAATGAGGACCTCACCTGGAACCCAGTTTTTATGTAAATCATGCACAAGGTTAACAAATTCAAAGCATTATTGTGGCATATGCAAAAAGATTTGGAATCATTCAGATAGTGGTAGTTGGGTTCGTTGTGATGGTTGTAAAGTATGGGTGCATGCAGAGTGTGACAAAATTTCAAGCAACCTGTTCAAGGATCTGGGAAGTACTGATTATTTCTGCCCTACGTGCAAAGCAAAATTTGATTTTGAACTATCAGACTCAGAAAAATCGCGACCCAAAATCAAAGGGAAGACAAGTAATGATGGAATGGTTCGTGCTAACAAAGTTACTGTACTCTGCAATGGTGTGGAAGGCATTTATTTTCCAAGCCTTCACCTTTTTCTGTTTCTTTGCAGGGTTGTGTGCAGGTGTGGTTCTTGTGGTACAGAAAAACAAGCACTTAGTGAGTGGGAACGGCATACTGGATCTAAGTCAAGGAATTGGAAGACCAGTGTGAGGGTAAAAGGTTCCATGCTATCTCTAGAACAATGGATGCTCCAAGTAGCTGAGTACCATGCAAATGTTGTTTCTGTCAAGCACCCTAAACGGCCTTCCATGAAAGAACGGAGGCAAAAGTTGCTCGCTTTTCTGCAGGAGAAATATGAACCTGTTTATGCAAAGTGGACGACAGAGAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGACTACAATAAGATTATTATCTGCAACAGATGTCAGATAGCAGTTCATCAAGAATGCTATGGAGCTAGAAATGTTCGGGATATAACATCTTGGGTCTGTAAAGTTTGTGAAACTCCTGATGTTAAGCGGGAATGTTGCCTCTGTCCAGTAAAAGGTGGTGCCTTGAAGCCCACTGATGTCGACACACTATGGGTCCATGTTACCTGTGCTTGGTTCAGACCCGAAGTCTCTTTTGCCAGTGATGAGAAAATGGAACCTGCTCTTGGTATCTTGAGCATTCCCTCCAATTCTTTTGTAAAGATTTGTGTAATCTGTAAGCAAATTCATGGTTCATGCATGCAATGCTGCAAGTGTTCTACTTACTACCACGCTATGTGTGCATCAAGAGCAGGCTATTGCATGGAGTTGCACTGCCTGGAGAAGAATGGTAGACAAATCACAAAAATGGTATCTTATTGTGCTTATCACAGGGCTCCCAATCCGGATACTGTTCTAATCATACAGACTCCACTTGGGGTATTTTCTACGAAAAGCCTTCTTCAAAACAAGAAGAGGGCTGGTTCAAGGTTAATTTCATCTAACAGAAAGGAAATAGAAGAAGTATCCGAAGCTTCTGAACTTGAGCCATTTTCTGCTGCCAGGTGTCAAGTTTATAAAAGATCAACTAGTGTGAAGAAGAGGACGGTTGAGGGAGCGGTTATTCACAAAGTGATGGGGCCATGCCATCATCCTTTAAAAGAAATACGGAGTCTTAATACATTCAACTTACCAATGGTAGAGGAACCAAAGATCTTTTCCTCATTTCGGGATCGATTGTACCACTTACAGAGAACAGAGAACGATCGGGTGTGCTTTGGTAGATCTGGCATACATGGATGGGGGCTTTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTCCGGCGTACTGTTGCTGATCTAAGGGAGGCGCGGTACAGATTGGCTGGCAAGGACTGCTATCTTTTTAAGATCAGTGAAGAAGTAGTTGTCGATGCCACCGACAAAGGAAATATTGCACGCTTGATCAACCATTCGTGTATGCCAAACTGCTATGCAAGGATCATGAGTGTGGGTGACGACGAAAGTCGGATTGTACTTATTGCCAAGGCTAACGTCCCTGCTGGCGAAGAGCTAACGTATGATTATTTGTTTGATCCGGACGAACCCGATGAATTCAAAGTCCCGTGTTTATGTAAAGCGCCAAACTGTCGAAAGTTCATGAATTAG | 3225 | 43.47 | MPNLKRCKHGDSVGEDDETSAARKKRKLNGYYPLNLLGDVAAGIIPLKLHDILGTNNKGITASWCTQISCSAMEMESKSNSRESLAREATKRPAEVPRPPLVRTSRGRVQVLPSRFNDSVIENWRKDSKTSLRDYSPDEEFKCKKEKFSFKTPRICNGTAKKVQTCDKLFVKCPALCEEEEDEPAGMEFKNFDFRKYSSSRSSLTSVHETVVEDEKFPVDVIGEDGSPKETKSKDGLYGPEDFYSGDIVWAKAGRKEPFWPAIVIDPITQAPELVLRACVPDAACIMFFGGNENQRDYAWVRRGMIFPFMDFVDRFQGQPELDRCKSNEFQIAIEEAFLAERGFTEKLIADINMAAGNTIADEFLFRGTQEATGSNQDPDCHSPPKRTSCIMEMYAKKKDGRHCEGCGQALPVKLVKKMRTSPGTQFLCKSCTRLTNSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKDLGSTDYFCPTCKAKFDFELSDSEKSRPKIKGKTSNDGMVRANKVTVLCNGVEGIYFPSLHLFLFLCRVVCRCGSCGTEKQALSEWERHTGSKSRNWKTSVRVKGSMLSLEQWMLQVAEYHANVVSVKHPKRPSMKERRQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDITSWVCKVCETPDVKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCMQCCKCSTYYHAMCASRAGYCMELHCLEKNGRQITKMVSYCAYHRAPNPDTVLIIQTPLGVFSTKSLLQNKKRAGSRLISSNRKEIEEVSEASELEPFSAARCQVYKRSTSVKKRTVEGAVIHKVMGPCHHPLKEIRSLNTFNLPMVEEPKIFSSFRDRLYHLQRTENDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRTVADLREARYRLAGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKANVPAGEELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* | 1075 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 10813546 | 10822402 | + | Chy6G117380.1 | Chy06g01210 | 228919 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy06g01210 | 1074 | CDD | PHD_ATX3_4_5_like | 641 | 687 | IPR042011 | - | |
| Chy06g01210 | 1074 | Pfam | PHD-finger | 654 | 688 | - | - | |
| Chy06g01210 | 1074 | ProSiteProfiles | PWWP domain profile. | 245 | 312 | IPR000313 | - | |
| Chy06g01210 | 1074 | MobiDBLite | consensus disorder prediction | 79 | 100 | - | - | |
| Chy06g01210 | 1074 | SUPERFAMILY | Tudor/PWWP/MBT | 238 | 342 | - | - | |
| Chy06g01210 | 1074 | Pfam | PHD-finger | 441 | 494 | IPR019787 | - | |
| Chy06g01210 | 1074 | MobiDBLite | consensus disorder prediction | 80 | 94 | - | - | |
| Chy06g01210 | 1074 | SUPERFAMILY | SET domain | 925 | 1071 | IPR046341 | - | |
| Chy06g01210 | 1074 | SMART | PHD_3 | 641 | 688 | IPR001965 | - | |
| Chy06g01210 | 1074 | SMART | PHD_3 | 441 | 493 | IPR001965 | - | |
| Chy06g01210 | 1074 | SMART | PHD_3 | 752 | 808 | IPR001965 | - | |
| Chy06g01210 | 1074 | Pfam | SET domain | 943 | 1048 | IPR001214 | GO:0005515 | |
| Chy06g01210 | 1074 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 692 | 810 | IPR013083 | - | |
| Chy06g01210 | 1074 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 693 | 808 | IPR034732 | - | |
| Chy06g01210 | 1074 | ProSiteProfiles | SET domain profile. | 932 | 1049 | IPR001214 | GO:0005515 | |
| Chy06g01210 | 1074 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Chy06g01210 | 1074 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 436 | 496 | IPR013083 | - | |
| Chy06g01210 | 1074 | ProSiteProfiles | Zinc finger PHD-type profile. | 439 | 495 | IPR019787 | - | |
| Chy06g01210 | 1074 | PANTHER | PHD FINGER PROTEINS | 1 | 1074 | - | - | |
| Chy06g01210 | 1074 | SMART | set_7 | 932 | 1055 | IPR001214 | GO:0005515 | |
| Chy06g01210 | 1074 | Gene3D | SET domain | 916 | 1074 | IPR046341 | - | |
| Chy06g01210 | 1074 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 633 | 691 | IPR013083 | - | |
| Chy06g01210 | 1074 | SMART | PostSET_3 | 1058 | 1074 | IPR003616 | - | |
| Chy06g01210 | 1074 | CDD | PHD_TCF19_like | 442 | 492 | - | - | |
| Chy06g01210 | 1074 | Pfam | PWWP domain | 246 | 338 | IPR000313 | - | |
| Chy06g01210 | 1074 | ProSitePatterns | Zinc finger PHD-type signature. | 642 | 687 | IPR019786 | - | |
| Chy06g01210 | 1074 | SUPERFAMILY | FYVE/PHD zinc finger | 640 | 704 | IPR011011 | - | |
| Chy06g01210 | 1074 | Gene3D | - | 240 | 344 | - | - | |
| Chy06g01210 | 1074 | SUPERFAMILY | FYVE/PHD zinc finger | 437 | 496 | IPR011011 | - | |
| Chy06g01210 | 1074 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 1 | 1074 | IPR025780 | - | |
| Chy06g01210 | 1074 | Pfam | PHD-zinc-finger like domain | 695 | 807 | - | - | |
| Chy06g01210 | 1074 | ProSiteProfiles | Zinc finger PHD-type profile. | 639 | 690 | IPR019787 | - | |
| Chy06g01210 | 1074 | CDD | ePHD_ATX3_4_5_like | 696 | 807 | IPR041955 | - | |
| Chy06g01210 | 1074 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 | 1 | 1074 | - | - | |
| Chy06g01210 | 1074 | CDD | SET_SETD1-like | 919 | 1070 | - | - | |
| Chy06g01210 | 1074 | ProSiteProfiles | Post-SET domain profile. | 1058 | 1074 | IPR003616 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy06g01210 | - | - | - | csv:101222415 | 2192.54 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy01g01854 | Chy-Chr1:23986171 | Chy06g01210 | Chy-Chr6:10813546 | 2.22E-07 | dispersed | |
| Chy06g01210 | Chy-Chr6:10813546 | Chy11g01890 | Chy-Chr11:25100017 | 0 | dispersed | |
| Chy06g01210 | Chy-Chr6:10813546 | Chy07g01638 | Chy-Chr7:20389627 | 4.82E-20 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi16g912 | . | . | . | . | Bpe03g00237 | . | . | . | . | . | . | . | . | . | Sed08g1878 | . | . | Bhi01g01481 | Tan01g0112 | Cmetu06g2373 | . | Hepe07g0068 | Mch10g0067 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cme06g01133 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cpe09g00030 | . | Bhi12g00774 | . | . | Lac11g0079 | Hepe06g0728 | . | Lcy12g0061 | . | . | . | . | . | . | . | . | . | Chy06g01210 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007355 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 36 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18174 | PF13832 | zf-HC5HC2H_2 | 7.90E-27 | CL0390 | Chy | TR |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chy06g01210 | Chy_Chr06 | FPKM | 0.0 | 0.0 | 0.0 | 0.0 | 1.269138 | 1.790098 | 1.397317 | 0.578945 | 0.387346 | 0.621593 |