Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01227 ATGTCGTCTACTCTGCTAGAGGTGACCCGTTCCTCACACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATCGACACCATCATGTCCACCACCGAAAAACTTGTTGAGATTTACGAAGATAAGGATAGCGCCAGGAAAGATGAAATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGATTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTCGATGTTAGCGAGGATGATGGCTTACTGAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTGTACAACCAATATATCAATTCAAAATTTGGAGAGGCCATCGAGTACTCTTCATACCTGGATGTTTTCTCACAGCCCCAGAAAATCTCTCAGAAACTAAAGTTTTCAAGACAATACAGGGAGTACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCGATGGGTTATTGGTACAATTGAAGGATGGGAGAACACTAGTCAAGATAATGGCCATGATTCTGCTCAGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTAGGTCCTGAAAGGTTAAAGGAGGGATTGGCGGCATTAGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACTCCTCTTCAATTGTTGGACAAAAAACATTTTGCGAAACTGTCTCGGCAACCTATTCAGAATGGGTCGGCTGTGGCTTCACAAAACAATGAAAATTTGAAACAAGTTGCCTTGATGGAAGCAAAAATTGAAAAATTGTGCGATCTTCTGGATGAGACAATTGCTCGAACGAAAGACAACATTGTTAAGAAGCAGGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACCCAAGCTGAGTCTGAAAGTGATGATGAAGAACAACAGATCTATAACCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGCGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAACGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACCAAGAACTTCAATGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAGTGGCGACCAGATCTCGAAGAAGAATATGAAGATAAGGAGGGTAACATTTACAACAAGAAGACATATACAGATCTGCAGCGCCAGGGATTGATATGA 1527 43.29 MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKLSRQPIQNGSAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11132003 11139903 - Chy6G117550.1 Chy06g01227 228936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01227 508 Coils Coil 352 379 - -
Chy06g01227 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
Chy06g01227 508 MobiDBLite consensus disorder prediction 362 381 - -
Chy06g01227 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Chy06g01227 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
Chy06g01227 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 173 IPR031774 -
Chy06g01227 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Chy06g01227 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Chy06g01227 508 Pfam Replication stress response SDE2 C-terminal 223 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01227 Chy-Chr6:11132003 Chy11g01892 Chy-Chr11:25114967 2.31E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01227 K12827 - csv:101205916 974.926