Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01231 ATGGTGAATGATGGTGTGGAGATAGAACTCTGTTTGGACTCCACCTGCAATGGTAGTTTTCAAACCATCCGATTCCCTTTCAGAATTCAAAACCAACAACCAAAATCATGTGGGTATTCCGGGTTTGACTTAACATGTCATCCCTCAGGTCAACCATTAATCCATCTCCCATTTTCAGGGGAATTCATAGTTCAATTCATAGATTACAAGAACCAAGAAATTTGGGTCAATGATCCAAACAACTGTCTTCCTCGAAAGATTCTGTCTCTTATGCTTTTTGGGTCGCCGTTTGATGCGAAAAACACTGTAGACTTCACCTTCTTTAATTGTTCGGGGAGTGATGAAATCCCATATGATTTCAATTTGAACCCAATTTCTTGCCTTAGTGGATTGTCGTATGCCGTTTTTGCTTCTTCTTCTTCAATGGTGAATGAGATTTTGTCGTCGAGGTGTGAGTTGGTAAAGACTGTATCGGTGCCGATGAGTTTGGAGACGTATTCATGGGATTTGAGGAATGATCTGAGATTGGGGTGGAAAAAGCCTAATTGTAAGAAGTGCGAGTTAAATGGTGGAATATGTGGGATTAAACCCAATTCAACTAATGAAATTCAATGCAAATACAATACTTCGACTCAAAGTGGGATGCCAAGAGGAGCTCGGTATGCAATATCAATTGGAGTTGGAGTACCAGCAACGATGTGTGTTTTGGGGTTCTTATGTTGCCTTTGTGCTAGAGTCAGATCCTCCACAAGTGGGCAAAATTCAAGCATTGAGGCCCATTGGGTCATCTCTTCTCGGCCCATTGCAATGGGCCTTGATGGGCCTACTATCGATTCATATCCAAAAATTGTATTGGGAGAAAGCTTGCGTCTACCAAAGCCCACTGACAATTTATGCCCAATTTGTCTATCGGAATATCGGCCCAAAGAGACTGTGAAGACTATTCCACAATGTCAACATTTCTTCCATCAAGATTGTATTGATGAATGGCTGAGATTGAATCCCTCTTGCCCCCTTTGTAGAATGCCTCCACTTAAATCTCCACCGTCCCATTTTCCCCTCTAA 1065 41.97 MVNDGVEIELCLDSTCNGSFQTIRFPFRIQNQQPKSCGYSGFDLTCHPSGQPLIHLPFSGEFIVQFIDYKNQEIWVNDPNNCLPRKILSLMLFGSPFDAKNTVDFTFFNCSGSDEIPYDFNLNPISCLSGLSYAVFASSSSMVNEILSSRCELVKTVSVPMSLETYSWDLRNDLRLGWKKPNCKKCELNGGICGIKPNSTNEIQCKYNTSTQSGMPRGARYAISIGVGVPATMCVLGFLCCLCARVRSSTSGQNSSIEAHWVISSRPIAMGLDGPTIDSYPKIVLGESLRLPKPTDNLCPICLSEYRPKETVKTIPQCQHFFHQDCIDEWLRLNPSCPLCRMPPLKSPPSHFPL* 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11186863 11199051 + Chy6G117590.1 Chy06g01231 228940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01231 354 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 351 - -
Chy06g01231 354 ProSiteProfiles Zinc finger RING-type profile. 299 341 IPR001841 -
Chy06g01231 354 Pfam Wall-associated receptor kinase galacturonan-binding 11 78 IPR025287 GO:0030247
Chy06g01231 354 SMART ring_2 299 340 IPR001841 -
Chy06g01231 354 SUPERFAMILY RING/U-box 294 345 - -
Chy06g01231 354 Pfam Wall-associated receptor kinase C-terminal 151 208 IPR032872 -
Chy06g01231 354 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 351 - -
Chy06g01231 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 345 IPR013083 -
Chy06g01231 354 Pfam Ring finger domain 298 341 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01231 - - - csv:105434923 722.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01231 Chy-Chr6:11186863 Chy07g01153 Chy-Chr7:16428613 6.34E-89 dispersed
Chy06g01231 Chy-Chr6:11186863 Chy06g01232 Chy-Chr6:11202822 1.95E-120 tandem
Chy06g00101 Chy-Chr6:672710 Chy06g01231 Chy-Chr6:11186863 2.61E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g903 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g01119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g01231 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005624 0 2 0 0 0 1 1 1 1 2 1 1 1 2 2 1 1 1 0 1 2 1 2 1 2 2 2 2 2 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01231 Chy_Chr06 FPKM 6.686723 9.450141 11.251079 12.504275 7.05204 6.609273 6.656163 16.498608 15.54981 15.198133