Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01240 ATGGAATTAGAAGCTTCTTCTTCTAATAAACTCATGCCTGAAGGCTTTCCCTCAGAGAAGAAAAGTCTTGACCCACAAGGGCCATTTCTTCAAAGTTGGAACAAGCTATTTGTGTTGTCTTGTGTGATTTCTGTTTCGTTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATATGAGAAAGATGTGCCTTAGATTAGATGGGAAAGTGGAGACTGTAGTCTGTATACTGCGGTTTTTTACAGATTTGTTCTATGTTGTGCATATTGTTTTTCAGTTTCGTACAGGATTTATTTCTCCCTCTTCACGAGTATTTGGAAGAGGTGTTTTAGAAGAAGATTCCTTGAGAATAGCAACTAGGTATCTGTCATCGTACTTTCTAATTGACATTTCTTCAGTACTCCCACTTCCACAGGTTGCCAGTGAAATGATGTGCTCCTTATGCATGCAAAATCCCCATTTTCTGCTAGCTTACTCTGGAAATATTTCTATGGTGGTGATTCTGATAATGAGAAGTTCGAGATCAATGAATACAAAGGACTTGCTGAAATATGCTGTATTATGTCAATTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTACAAAGAAGTTACGAGGACGTCGGGCATACTCATTGAAACAGCTTGGGCAGGAGTGGCATTTAATCTCTTTCTGTACATGCTAGCTGGCCACGTATTTGGGGCAATCTGGTACTTATGTTCCATACAGCGAGTAGGCCAGCGCTGGCAAGAAGCTTGTACCAAGCATCTTGGCTGTAGCTTTACTTCCTTATATTGTGATCATAATTACATTAATGAAGGGAATCAATTCCTCACTGATATGTGCCCTGTCAAAAAGAAAAATATTGAACCTTTTAACTTTGGAATATTCATTCAAGCCCTTCAACCTGATATTGTGGAATCAGATTTTTCGAAGAAGTTCCTTTACTGCTTCTGGTGGGGCTTGAGAAGTCTAAGATTTTACTCACAGCAGTGGAGAACCTGGGCAGCTTGTTTCATTCAAGCAACATGGCGGTGGCGACGCCATCAAAGAAAGAAGCTCAAAGAGTCTCTCAAGGAGGAAGAGAGTAGGTTGAAAAACGCATTAGCTTCCCTTGAGGACCAGTCACTGAGTTTAGGCACCACCGTCTACGCAGCCAGATTTGCTGCTAACATGCTTCGCTCGGTGAGACGAAATAGTACTAGAAGAGCTACAATAGCCATATCGCTTCAGAAGCCAGCTGAGCCTGATTTTTTGACCTTGGAAGATAACAACATATAA 1281 40.98 MELEASSSNKLMPEGFPSEKKSLDPQGPFLQSWNKLFVLSCVISVSLDPLFFYVPVIDMRKMCLRLDGKVETVVCILRFFTDLFYVVHIVFQFRTGFISPSSRVFGRGVLEEDSLRIATRYLSSYFLIDISSVLPLPQVASEMMCSLCMQNPHFLLAYSGNISMVVILIMRSSRSMNTKDLLKYAVLCQFVPRFLRIYPLYKEVTRTSGILIETAWAGVAFNLFLYMLAGHVFGAIWYLCSIQRVGQRWQEACTKHLGCSFTSLYCDHNYINEGNQFLTDMCPVKKKNIEPFNFGIFIQALQPDIVESDFSKKFLYCFWWGLRSLRFYSQQWRTWAACFIQATWRWRRHQRKKLKESLKEEESRLKNALASLEDQSLSLGTTVYAARFAANMLRSVRRNSTRRATIAISLQKPAEPDFLTLEDNNI* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11326830 11331258 - Chy6G117680.1 Chy06g01240 228949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01240 426 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 325 - -
Chy06g01240 426 Pfam Ion transport protein 31 325 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy06g01240 426 SUPERFAMILY Voltage-gated potassium channels 24 325 - -
Chy06g01240 426 Coils Coil 351 378 - -
Chy06g01240 426 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 324 420 - -
Chy06g01240 426 MobiDBLite consensus disorder prediction 1 22 - -
Chy06g01240 426 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 324 420 - -
Chy06g01240 426 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00992 Chy-Chr5:14586237 Chy06g01240 Chy-Chr6:11326830 9.48E-102 dispersed
Chy06g01240 Chy-Chr6:11326830 Chy09g01430 Chy-Chr9:15884045 5.51E-175 dispersed
Chy06g01238 Chy-Chr6:11293876 Chy06g01240 Chy-Chr6:11326830 2.19E-60 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01240 K05391 - csv:101214911 593.578