Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01254 ATGGGAGTTGTGACTGTTTCAAGCGCTGCAGCACGAACTCCTTTTCGGCTGGGTGTGAAATTTTCTAATCACAGTTCTACATTGAAAAGACCATCGATTGTTGCTTTTAAAGCAGATAAGCACACAAACACAACACTGGTCTCACCTCACGAGCAAGTAACATTGCCTGTGGAGAGTAATAACAGAAGGAAGAAAGGATCAGGAAATACTAGCAAACCGTTGAAGAGAGTTAAAGCTGTCCTTATAGATGAAGCTACTCCATGTTCTCTGGATTTGGATTACAATGAGGCTGCTGCTAAACTTGAAAACATTTTCAAGCTTAGCCCTATGACTGAGGATTCTGATAAGGAGTGTAAAGATGGTAGATCAAAAAGAGGACAGCAAAGGAGCAAAAAATCAGCCAAGAGACCAAGTGATGGCATTGTCAGGAACCAAACTAAGAGGATTAAGCGACTAGATCTCGATAAAAGGATTGCATTGAAAAATAAAAAGGAAGGCAAAGCGGTTGCTTTATTAAGGAAACAAAAAGATACTAAAAATGAAGCTGATGAGATTGATGGTCTGCGATTAAATCTTGAAAAGAGGATAGCATTGAAAAGTAACAAGGAAGGAAAAGCGGTTCCTTCATTAAGGAAACAGAAAGAAACCAAAAATGAAGATGATGAGATTGATAGGCTTGTAAGAGACTATTCTGCTTCAACTGATTTGGTTAGCTTAGACTGGAAGAAAATGAAGATTCCTCCTGTTCTTCCTTCATCAGAGCATACCCGCTTGTTCAAGTTGGTCCAGCCAATGAAGGCACTTGTTGAAGTACAAGAGGAGCTGCAGAAAGGGTTAGGAAGAGAACCAACTGAAGGGGAATTGGCAAATGCGACGAATATGAATGTAATTCAAGTAAGAAGGCAACTGGAGGTCGGTCGTGCTGCCAGAAATAAGCTCATTAAGCACAATCTACGCCTTGTATTATTTGTAATCAACAAATACTTTGAAGATTTTGCAAGTGGGCCAAAATTTCAAGACCTTTGTCAAGCAGGAGTCAAGGGACTCATTACAGCAATTGATCGATTTGAGCCAAAGAGGAAATTCCGGCTATCGACTTATGCTTTATTTTGGATAAGGCATGCTATTATTCGGTCAATGACTCTGTCAAGCTTCACACGTGTCTCATTTGGACTTGATTCGGTAAGAGTTGAAATTCAAAGAGCTAAACTTGAGTTATTATGTGAGCTTCATAGATTACCAACAGAGGAAGAGATAACTGCAAAAGTTGGCATCTCACAAGAGAGGTACCTAGAAGTAATGAGAGCTACAAAACCAGTTTACTCTCTCCATTCAAGGCACTCAACTACATCGGAAGAGTTGATCAATGGGATCACTGATGTAGAAGGCACGGGAGGTGACAACCGAAGGCAACCAGCTCTTCTGAGGCTTGCTTTAGACGATGTGCTTGATTCTCTTAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATACGGTCTCGATGGCAAAGGAAACCGAACATTAGGTGAGATAGCCGGAAATCTAAATATCTCAAGGGAAATGGTTCGAAAGCATGAAGTGAAAGCTCTCATGAAGCTGAAGCATCCTGCAAGAGTCGATTACCTTCGTCGGTATTTAATCTGA 1644 40.94 MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKGSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKDGRSKRGQQRSKKSAKRPSDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDGLRLNLEKRIALKSNKEGKAVPSLRKQKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQRAKLELLCELHRLPTEEEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11536325 11539603 - Chy6G117820.1 Chy06g01254 228963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01254 547 PRINTS Major sigma-70 factor signature 364 372 IPR000943 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 PRINTS Major sigma-70 factor signature 507 522 IPR000943 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 PRINTS Major sigma-70 factor signature 522 533 IPR000943 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 PRINTS Major sigma-70 factor signature 340 353 IPR000943 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 PRINTS Major sigma-70 factor signature 486 498 IPR000943 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 309 535 IPR014284 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 Pfam Sigma-70 region 3 397 461 IPR007624 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 Pfam Sigma-70 region 3 268 308 IPR007624 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 394 450 IPR013324 -
Chy06g01254 547 Gene3D - 304 381 - -
Chy06g01254 547 MobiDBLite consensus disorder prediction 51 72 - -
Chy06g01254 547 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 231 380 IPR013325 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 MobiDBLite consensus disorder prediction 51 67 - -
Chy06g01254 547 MobiDBLite consensus disorder prediction 111 144 - -
Chy06g01254 547 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 473 546 IPR013324 -
Chy06g01254 547 Pfam Sigma-70, region 4 482 535 IPR007630 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 187 - -
Chy06g01254 547 Pfam Sigma-70 region 2 313 379 IPR007627 GO:0003700|GO:0006352|GO:0006355
Chy06g01254 547 Gene3D - 386 438 IPR036388 -
Chy06g01254 547 Gene3D - 260 303 IPR036388 -
Chy06g01254 547 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 189 547 - -
Chy06g01254 547 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 187 - -
Chy06g01254 547 Gene3D - 470 547 IPR036388 -
Chy06g01254 547 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 189 547 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01254 K03093 sigI; RNA polymerase sigma factor - csv:101208584 1046.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01254 Chy-Chr6:11536325 Chy08g00860 Chy-Chr8:16048414 6.19E-33 dispersed
Chy06g01254 Chy-Chr6:11536325 Chy11g01965 Chy-Chr11:25641264 4.14E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g868 Blo06g01076 . . . . . . . Cmo16g00073 Cmo18g01330 . . . . Sed07g0818 . Cpe14g00055 Bhi01g01453 Tan01g0146 Cmetu06g0694 . Hepe07g0087 . . . . . . . . . . . Cone14ag0030 Cone15ag0032 . . . . . . . Bda15g00776 . Bpe12g00373 . . . . . Cma16g00070 Cma18g01301 Car16g00061 Car18g01217 Cpe09g00041 . . . . . . . . Cla05g00949 Cam05g1040 Cec05g1045 Cco05g1039 Clacu05g1031 Cmu05g0981 Cre05g1060 . Csa03g02199 Chy06g01254 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005753 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01254 Chy_Chr06 FPKM 0.0 0.0 5.49496 0.0 0.0 0.0 0.0 1.375858 1.019826 0.0