Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01272 ATGATGAAGAATAGCTTCATCTTCCTTGAAATTTTATTGTTTTTAGCATTTATCTGCTCAGGAGTTCTCACCGAGCCGGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCTCACTCCCCCTCTCTCAACTGGAATGAGAGTAGTTCTGTGTGCAAAGCTTGGACAGGAGTGTTTTGCAGTTCTGATGAGTCTAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTGCGCGGTCCAATCCCTGTGAATACTCTTAGCCGTCTATCTGCGCTCGAGATTCTAAGCCTTAGGTTAAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTGGAAGCTGGGAAACTTGAGTTCCTTGTATCTGCAATATAACAAGTTTTCTGGTCCTTTGCCTTCAGATTTTTCAGTTTGGAATAACCTTAGTGTCATTGATCTATCAAACAATTTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTCTGAATCTTGCAAACAACTCGTTTTCAGGCGAAATTCCGAATCTTGATGTTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCGCTGGTAACAATGTTACTGAAGAACATAGTGCAATTCCCCCATCTTTTCCCCTCCAGCCTCCCACTGCTCAACCGACGAGAAAAGGCAAAGGGCTGAGTGAATCTGCAATACTTGGTATTGCAATTGGTGGTTCTGTTATTGGGTTTATTTTGCTAGCTGTTCTTTTGACTGTTTGGTGGTTGAAAAGAGGGAAAGAAAATACGAGTCCCTCTATGGACCCCAAAAAGAAGGAAGCGTCTGTGAAAAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTAAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTCGGGAAGGGAACCTTTGGAGTGAGTTACAAGGCAGCTTTGGAGGACTCGTCAACCGTTGTAGTGAAGAGGCTGAATCAAGTGACAGTTGGAAAACGAGAATTTGAACAGCAGATGGAGTTGATTGGAAAAATTAAGCACGAGAATGTCGTTTCCTTAAGAGCATACTATTATTCAAAGGACGAGAAACTCATGGTCTATGACTACTATGGACAAGGGAGCGTGTCTGCAATGTTACATGGCAAGGAAGGGGATGGTTTTCGTGTGTTAGATTGGGATACTAGGATGAAAATTGCCATTGGAGCGGCTCGAGGTCTTGCTCATATCCACACAGAAAATGGTGGAAAATGTACCCATGGAAATGTCAAAGCCTCAAACATCTTCCTCAACTCTAAAGGATACGGTTGTGTATCCGACGTTGGCTTGGCTGGGCTAATGAATTCAATTCCACTACCAGCCACAAGAACCCCTGGTTACCGAGCGCCTGAATTGACCGACACTCGGAGAGCATCAGAAGCAGCTGATGTCTACAGTTTCGGGGTGGTGCTACTGGAACTTCTGACTGGAAAATCTCCCATACACGTTGAAGGTTGTAATGAAGTTGTTAATTTAGTGAGGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTCAGGTATCCAAACATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAACAGAGGCCAAAAATTATCGATCTAACGTCGAGAATCGAGCAAGTTCGGCAACACAGTACAGGAACCCAACCGTCATCGGGGTCAAAATCAGCGTATTCGACTCCAGTTCATGTAATGGAAATCGGTTCTTCCTCACATTTACCTTGA 1896 43.51 MMKNSFIFLEILLFLAFICSGVLTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKAWTGVFCSSDESRVVALRLPGTGLRGPIPVNTLSRLSALEILSLRLNRISGPFPFDFWKLGNLSSLYLQYNKFSGPLPSDFSVWNNLSVIDLSNNFFNGSIPSSISKLSHLTVLNLANNSFSGEIPNLDVPSLQRLDLSNNNLTGNVPHSLQRFPSWVFAGNNVTEEHSAIPPSFPLQPPTAQPTRKGKGLSESAILGIAIGGSVIGFILLAVLLTVWWLKRGKENTSPSMDPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSSTVVVKRLNQVTVGKREFEQQMELIGKIKHENVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHGKEGDGFRVLDWDTRMKIAIGAARGLAHIHTENGGKCTHGNVKASNIFLNSKGYGCVSDVGLAGLMNSIPLPATRTPGYRAPELTDTRRASEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKIIDLTSRIEQVRQHSTGTQPSSGSKSAYSTPVHVMEIGSSSHLP* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11694990 11697310 - Chy6G118000.1 Chy06g01272 228981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01272 631 PANTHER LRR RECEPTOR-LIKE KINASE 16 622 - -
Chy06g01272 631 ProSiteProfiles Protein kinase domain profile. 327 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g01272 631 Gene3D Transferase(Phosphotransferase) domain 1 403 616 - -
Chy06g01272 631 PANTHER OS05G0588300 PROTEIN 16 622 - -
Chy06g01272 631 Pfam Protein kinase domain 330 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g01272 631 SUPERFAMILY Protein kinase-like (PK-like) 331 595 IPR011009 -
Chy06g01272 631 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Chy06g01272 631 MobiDBLite consensus disorder prediction 282 302 - -
Chy06g01272 631 Gene3D Phosphorylase Kinase; domain 1 292 401 - -
Chy06g01272 631 Gene3D Ribonuclease Inhibitor 27 233 IPR032675 -
Chy06g01272 631 MobiDBLite consensus disorder prediction 283 302 - -
Chy06g01272 631 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Chy06g01272 631 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
Chy06g01272 631 SUPERFAMILY L domain-like 38 212 - -
Chy06g01272 631 MobiDBLite consensus disorder prediction 599 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01272 Chy-Chr6:11694990 Chy10g01166 Chy-Chr10:16515367 2.02E-135 dispersed
Chy02g00898 Chy-Chr2:5795819 Chy06g01272 Chy-Chr6:11694990 2.76E-20 transposed
Chy02g01942 Chy-Chr2:22846973 Chy06g01272 Chy-Chr6:11694990 0 transposed
Chy04g01978 Chy-Chr4:25649898 Chy06g01272 Chy-Chr6:11694990 3.68E-77 transposed
Chy05g01346 Chy-Chr5:17569042 Chy06g01272 Chy-Chr6:11694990 1.05E-165 transposed
Chy06g00247 Chy-Chr6:1657758 Chy06g01272 Chy-Chr6:11694990 2.08E-61 transposed
Chy06g01346 Chy-Chr6:13079193 Chy06g01272 Chy-Chr6:11694990 3.49E-154 transposed
Chy08g00561 Chy-Chr8:13215235 Chy06g01272 Chy-Chr6:11694990 0 transposed
Chy09g01277 Chy-Chr9:14792785 Chy06g01272 Chy-Chr6:11694990 0 transposed
Chy11g01173 Chy-Chr11:17853820 Chy06g01272 Chy-Chr6:11694990 0 transposed
Chy12g01586 Chy-Chr12:19388379 Chy06g01272 Chy-Chr6:11694990 8.96E-97 transposed
Chy06g01272 Chy-Chr6:11694990 Chy09g01416 Chy-Chr9:15799984 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71335 PF00069 Pkinase 3.00E-33 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01272 - - csv:101207123 1207.2