Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01273 ATGGTTGTATGGAACCTTGATGCGAAGGGTTTGAACTGTGATATCAATCACATTGAGACAAGAAAGAGGAGGGGAATGGAGGCCATATGGGATGTGTTCTGTGGAGGTTATGACTGTTTCGATGGTAGTGAGAAACCTTGTGGTTTTGACTACAACTTTCTTTCTCGTTCCTCTCCATGTTTAACTCAAGCTCTGATCATCAGTTTTGATGCTCTACTGTTCATCTTGCTTGTATCCTTGCTTGTATCCAATATTGTGGAGAAGTCAATGAAAAGAGTTCACATGTCGTATCAAATTCGTAACAGTTCAGGTTTGCTGATTTTGTCTGCTATCTTCAATGGTTGTGTTGGATTACTGTACCTTGGCTTAGGCATTTGGACTTTGGTGGAGAAGTTGAGGAAAGATCACACTGCTTTGCCTTTGCAGCTGTGGTTATCAACTTCCTTCCATGGCTTAACATGGTTATTGTTGAGCTCTATTGTTAGCTTATGGAGTAAACAGCTTCCAAGAGCCTTGTTGCGCCTACTGTCCATTGCAGCATTCGTATTTGCTGGGGTTGTTTGTGCTCTTTCACTTTTTGATGTTGTTTCGAGTAAAATAGTATCAGCAAAGATGGTTTTAGATGTTCTATCTGTTCTGGGATCGGTTCTATTATTGCTTTTCTCTTTTGGTTGTTTTAGCTGCCAAGAGAGTGAGGAGAGTATCAATGGGAATGGACATTACACCCCATTAATTGGTGAGGCCAATGAAAGCGGTAAGCTTGATCCTGTTACTCCATTAGCCAAAGCTGGATTGCTGAGTAAAATTTCATTTTGGTGGATGAATCCTTTAATGAAAACGGGAAAGAAGAAGACTCTCAACATTGAAGATATACCGATGATGCGGGAGGCAGATCGAGCAGAAAGTTGTTACTTACAGTTCATAAACCAAATTAATGAACATAAAAGGAAAGGCCAAAGTTTTCAACCATCAGTCCCCAAAGTCATCCTTTTATGCCATCGAAGGGATATATTATTGTCAGGATTTTTTGCTTTGTTGAAAATACTCTTTGTCTCTGCTGGTCCTCTGCTTCTCAATGCCTTCATTTTGGTTGCTCAGGGACACCAAAGTTTCAAATATGAAGGTCTTGTGCTTGCCGTTTCACTTTTCTTTTCGAAAAGTATTGAATCCATATCACAAAGGCAATGGTACTTCAGAACCAAGCTTGTTGGTCTTAAAGTTAGATCTTTGCTCTCAGCAGCTATTTATAAGAAGCAATTGCGATTGTCCAGTGAAGCTAAGTTGATGCACTCGAGTGGTGAAATCATGAACTACGTTACCGTAGACGCGTATAGGATTGGAGAATTTTCATTTTGGTTCCACCAAACTTGGACCACGAGCCTTCAGCTATGTATTGCTCTTTTGATCCTCTATAAAGCAGTAGGAATAGCAACCATAGCCTCCCTTTTAGTGATAATTCTATGTGTAGTTGGGAATGCTCCAATTGCCAAGCTACAACATAAGTTTCAGAGTAAATTGATGGCGGCACAAGATGAGAGACTGAAAACGTTTACGGAGGCTCTTGTAAACATGAAAATTTTGAAGTTATATGCTTGGGAAACCCATTTCAAGAACGTAATTGAGAAGTTAAGAAAGGAGGAGCACAGGTGGTTGGCAGCCGTGCAATATAGAAAAGGATACAATGGCATTCTCTTTTGGTCATCTCCTGTTATTGTCTCTGTTGCAACCTTTGGGGCATGTAGTTTTTTGAACATTCCACTACATGCCAATAATGTGTTCACTTTTGTATCTGCATTGCGTCTTGTTCAAGAACCTGTCAGATCTATGGGCGATGTCATTGCGGCAATCATTCAAGCAAGGGTCTCTTTTACACGTATTGTTGACTTTCTGGAGGCACCAGAGCTGCAAAGTTCTAGCGTTCCTAGAAAGTGTGTGAATATGAATGATAACTACTCCATTCGGATCAGTTCAGCATCTTTCTCGTGGGAAGAGAATTCAGCGAGGCCTACTCTTCGTAATATAAATTTAGAGGTCAAGCCAGGTTCAAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCTACTCTTCTAGCGGCTATTCTTGGTGAAATTCCAAATGTTGAGGGAAATATCCAAGTTAATGGAAGGATTGCTTATGTGTCTCAAACAGCATGGATCCAAACGGGGTCCATACGTGATAACATTTTATTTGGCTCTGAAATGGACAATTGGAGATATCAAGAAACACTTGAGAAGTGTTCATTGATGAAGGACCTTGAGTTACTTCCTTACGGTGATCTCACTGAGATTGGGGAAAGAGGAGTAAATCTCAGTGGTGGACAAAAGCAGAGGATTCAACTTGCACGTGCGCTATATCAAAATGCTGATATATATCTTTTAGACGATCCATTTAGTGCTGTTGATGCTCATACTGCCACAAGTTTGTTCAATGGATATGTTATGGAAGCGCTCTTGGGAAAAACTGTTCTTCTTGTGACTCATCAAGTTGATTTCTTACCTGCTTTTGAATCTGTCCTGCTGATGTCTGATGGGGAAATTCTAGAAGCAGCCGCTTACGATCAGCTGTTAGCACATAGCAAAGAATTTCAGGACCTTGTCAATGCACACAAAGAGACTGCTGGTACTGGAAGCCTTGCAGATTTATCTGCTACTAAGAGTTTGAGAACATCTAGTAAAGAGATAAAGAAATCCTTTACTGAGAAACTGTCGGTAGTTTCTGATGCTAATCAGATAATTAAGCAGGAGGAGCGGGAAGTTGGAGACTCAGGATTCAAGCCTTATATTCAGTATCTGAATCAGAACAAAGGGTTCTTCTTCTTCTCCTTAGATGTTCTCTTCCAATTAGCATTTGTGGCATGTGGAATAACTCAAAACTCTTGGATGGCTATGAACGTTGACAATCCCAACGTCAGCACTTCGCGCCTGATCATAGTTTACTTGTTGATTGGAGTTACTTCAACATTATTCCTGGCTTCAAGAGCTCTTTTAACAGCTTTTTTAGGTCTGCAATCTTCAAAATCATTGTTTTCTCAGCTACTCACATCTCTTTTTCGCGCACCGATGTCCTTCTATGATTCCACACCTCTTGGAAGGATACTTAGTCGGGTCTCAATGGATCTCAGTATTGTGGATCTTGATGTCCCGTTTAGTTTAATATTTTCTGTGGCTGCAACCTCCAATGCCTATGCCAGTCTCGGAGTTTTAGCCGTAATCACGTGGCAAGTTCTATTCATCTCCATACCTACAATCATTTTGGCAGTTTGCTTGCAGAGATACTATTTCGCTTCTGCTAAAGAACTCATGCGTCTTAACGGGACGACAAAGTCAATGGTAGCGAACCATTTGTCTGAATCCATAGCTGGAGCAATGACAATTCGAGCTTTTGAAGAGGAAGAGAGATTCTTTAAGAAAAATCTTGAATTTGTTGATGGAAATGCCAGTCCTTTCTTTCACAATTTTTCAGCAAACGAGTGGCTGATACAACGGTTAGAAATGCTCAGTGCAGTAGTCCTAGCCTCGGCTGCATTTTGCATAGTATTGCTACCAACTGGAAGTTTCAGCCCTGGTTTCATTGGAATGGCACTCTCTTACGGCCTTTCTTTAAATATGTCCCTGGTCTTCTCTATTCAGAATCAATGTAATTTAGCCAATCACATCATTTCTGTAGAAAGATTAAACCAATACATGCATTTATCAAGTGAGGCTCCCAAAATCATCGAAGCTAACCGTCCTCCAAGCGATTGGCCCTCTATCGGCAAAGTGGAGATAATTGACTTGAAGATTCGGTATAGACCCAATACGCCCCTTGTTCTTCATTGTATTAGCTGCACATTTGAAGGCGGACATAAGATTGGTATTGTTGGTCGGACTGGCAGTGGTAAATCTACCCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCAGGGGGAAAGATTGTAGTTGACGGCATCGACATTTGTTCGATTGGACTTCATGACCTGCGTTCACGTTTTGGAATTATTCCTCAAGACCCAACCCTTTTTAAGGGGACTGTTAGATACAATTTGGATCCCTTAGTTCAGCATAGTGACGATGAAATATGGGAGGTACTCGGAAAGTGTCAGCTAAGAGACGCTGTCGAAGAGCGGGAGGCAGGATTGGATTCCTTGGTTGTGGAAGATGGTTCAAACTGGAGCATGGGACAACGACAACTTTTCTGTTTAGGCCGGGCGCTTTTGAGGAGAAGTCGAATATTAGTGCTTGACGAAGCAACTGCATCAATTGACAATGCGACTGATTTGATTCTACAGAAAACTATTCGATCTGAATTTGCCGACTGTACTGTAATTACAGTTGCTCACAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATAAGTGATGGGAGAATAGCAGAATACGACAAACCAGCTACGTTGATCAAAAGAGAAGGCTCCCTATTTGGACATCCTGCTTCATTCAGAAATGGCCATCTCCCCATCAGAGTAGCTGGTGCAAACAGAGTAATAGCCACATTCTGTTAG 4554 41.35 MVVWNLDAKGLNCDINHIETRKRRGMEAIWDVFCGGYDCFDGSEKPCGFDYNFLSRSSPCLTQALIISFDALLFILLVSLLVSNIVEKSMKRVHMSYQIRNSSGLLILSAIFNGCVGLLYLGLGIWTLVEKLRKDHTALPLQLWLSTSFHGLTWLLLSSIVSLWSKQLPRALLRLLSIAAFVFAGVVCALSLFDVVSSKIVSAKMVLDVLSVLGSVLLLLFSFGCFSCQESEESINGNGHYTPLIGEANESGKLDPVTPLAKAGLLSKISFWWMNPLMKTGKKKTLNIEDIPMMREADRAESCYLQFINQINEHKRKGQSFQPSVPKVILLCHRRDILLSGFFALLKILFVSAGPLLLNAFILVAQGHQSFKYEGLVLAVSLFFSKSIESISQRQWYFRTKLVGLKVRSLLSAAIYKKQLRLSSEAKLMHSSGEIMNYVTVDAYRIGEFSFWFHQTWTTSLQLCIALLILYKAVGIATIASLLVIILCVVGNAPIAKLQHKFQSKLMAAQDERLKTFTEALVNMKILKLYAWETHFKNVIEKLRKEEHRWLAAVQYRKGYNGILFWSSPVIVSVATFGACSFLNIPLHANNVFTFVSALRLVQEPVRSMGDVIAAIIQARVSFTRIVDFLEAPELQSSSVPRKCVNMNDNYSIRISSASFSWEENSARPTLRNINLEVKPGSKVAICGEVGSGKSTLLAAILGEIPNVEGNIQVNGRIAYVSQTAWIQTGSIRDNILFGSEMDNWRYQETLEKCSLMKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVMEALLGKTVLLVTHQVDFLPAFESVLLMSDGEILEAAAYDQLLAHSKEFQDLVNAHKETAGTGSLADLSATKSLRTSSKEIKKSFTEKLSVVSDANQIIKQEEREVGDSGFKPYIQYLNQNKGFFFFSLDVLFQLAFVACGITQNSWMAMNVDNPNVSTSRLIIVYLLIGVTSTLFLASRALLTAFLGLQSSKSLFSQLLTSLFRAPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFSVAATSNAYASLGVLAVITWQVLFISIPTIILAVCLQRYYFASAKELMRLNGTTKSMVANHLSESIAGAMTIRAFEEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAAFCIVLLPTGSFSPGFIGMALSYGLSLNMSLVFSIQNQCNLANHIISVERLNQYMHLSSEAPKIIEANRPPSDWPSIGKVEIIDLKIRYRPNTPLVLHCISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKIVVDGIDICSIGLHDLRSRFGIIPQDPTLFKGTVRYNLDPLVQHSDDEIWEVLGKCQLRDAVEEREAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRSEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDKPATLIKREGSLFGHPASFRNGHLPIRVAGANRVIATFC* 1518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11713822 11720454 + Chy6G118010.1 Chy06g01273 228982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01273 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 653 876 IPR003439 GO:0005524
Chy06g01273 1517 ProSitePatterns ABC transporters family signature. 778 792 IPR017871 GO:0005524
Chy06g01273 1517 Pfam ABC transporter 1280 1427 IPR003439 GO:0005524
Chy06g01273 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 647 876 IPR027417 -
Chy06g01273 1517 Pfam ABC transporter 671 805 IPR003439 GO:0005524
Chy06g01273 1517 Gene3D ABC transporter type 1, transmembrane domain 329 630 IPR036640 GO:0005524|GO:0016021
Chy06g01273 1517 Gene3D - 631 893 IPR027417 -
Chy06g01273 1517 CDD ABC_6TM_ABCC_D2 944 1237 IPR044726 GO:0140359
Chy06g01273 1517 SUPERFAMILY ABC transporter transmembrane region 331 634 IPR036640 GO:0005524|GO:0016021
Chy06g01273 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 338 618 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy06g01273 1517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1262 1496 IPR003439 GO:0005524
Chy06g01273 1517 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 98 1486 - -
Chy06g01273 1517 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 98 1486 - -
Chy06g01273 1517 Gene3D ABC transporter type 1, transmembrane domain 912 1243 IPR036640 GO:0005524|GO:0016021
Chy06g01273 1517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 952 1225 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy06g01273 1517 CDD ABC_6TM_ABCC_D1 339 626 IPR044746 GO:0140359
Chy06g01273 1517 SUPERFAMILY ABC transporter transmembrane region 936 1244 IPR036640 GO:0005524|GO:0016021
Chy06g01273 1517 SMART AAA_5 1288 1480 IPR003593 -
Chy06g01273 1517 SMART AAA_5 680 853 IPR003593 -
Chy06g01273 1517 CDD ABCC_MRP_domain1 653 853 - -
Chy06g01273 1517 Pfam ABC transporter transmembrane region 338 605 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy06g01273 1517 Pfam ABC transporter transmembrane region 971 1209 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy06g01273 1517 CDD ABCC_MRP_domain2 1260 1480 - -
Chy06g01273 1517 Gene3D - 1245 1493 IPR027417 -
Chy06g01273 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1489 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01273 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - csv:101210136 2791.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02213 Chy-Chr1:26595145 Chy06g01273 Chy-Chr6:11713822 0 dispersed
Chy05g00882 Chy-Chr5:13047646 Chy06g01273 Chy-Chr6:11713822 0 dispersed
Chy06g01273 Chy-Chr6:11713822 Chy11g01872 Chy-Chr11:24922240 0 dispersed
Chy06g01843 Chy-Chr6:22183645 Chy06g01273 Chy-Chr6:11713822 9.71E-09 dispersed
Chy06g01273 Chy-Chr6:11713822 Chy01g01680 Chy-Chr1:22731783 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01273 Chy_Chr06 FPKM 5.468716 6.031901 10.958323 10.824576 8.63196 9.026064 7.317333 16.949266 14.466763 14.224629