Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01277 ATGTCACAAGTGGTGGCTACCAGGTCGATTCACAGCACATTCCCGTGCCCTAGCTCGGGATCTGTGCAAGAACGACTCGACAGAGCTCGCTCTTTTGGTGTTGGCTCTAAAGTGTTGACGCATGAGAAGAAGAGTTGGAATTTTTCTTATAGGAGAAGTTTAATCACATCTAAGAAAGCTGCTCAAGCTGAAGTTGTTCCGGTTTCACCTCAAGATGCTCATAAGGTAGATGAGCAATTTGAACATATACGAGCTGTTCAACAGCTTGGGGATACACCTGTTGGTATTTGGTCGAAGCCTACAGTTAGACGTAAGACAAAGATTGTGTGCACGATTGGACCTTCAACTAATACGAAGGAAATGATTTGGAAACTGGCTGAGGCTGGAATGAATGTTGCAAGATTGAATATGTCCCATGGAGACCATGCATCTCATCAGAAAGTTATAGATTTAGTTAGAGAATACAATGCCCAATCGCAAGACAATTGCATTGCAATCATGCTTGACACCAAGGGTCCTGAGGTTAGGAGTGGTGACCTACCACAACCAATATTGTTAGAAAGTGGACAGGAATTTACCTTTACCATACGGAGAGGTGTTAGCACTGCAGATACTGTCAGTGTGAACTACGATGATTTTGTTAATGATGTTGAAGTTGGGGACATGCTTCTTGTTGATGGTGGAATGATGTCGTTGATGGTGAAGTCTAAGACAGAAGATTCTGTCTTGTGTGAAGTTATTGATGGAGGAGAGCTTAAGTCCAGGAGACATTTAAATGTTCTAGGGAAAAGTGCTACACTTCCTTCAATTATTGGCTGTGATGCTGATATTCATGTGATTGTAAAAATAGAAAGTGTATACTCCATACCAAATTTGCATTCAATTATTACAGCTTCTGATGGGGCAATGGTTGCCAGAGGTGATCTTGGTGCAGAACTTCCTATTGAAGAGGTTCCTCTTCTGCAGGAGGAGATAATCAACCTGTGTCGAGGCATGGGGAAAGCTGTCATTGTAGCTACTAACATGCTTGAGAGTATGATTGTTCATCCGACACCAACCAGAGCAGAAGTATCTGATATTGCTATTGCAGTTAGAGAGGGTGCTGATGCAATCATGCTGTCTGGAGAAACTGCTCATGGAAAATTCCCATTAAAAGCTGTGAAAGTAATGCATACAGTTGCTTTACGGACTGAAGCAACTATAGAAGGTGGTCGAATGCCATTTAATCTCGGTCAAACATTCAAGAACCATATGAGCGAGATGTTTGCTTATCATGCAACAATGATGTCCAACACTCTTGGAACCTCAATAGTTGTCTTCACTAGAACTGGTTTTATGGCTATCCTCCTTAGCCATTATCGACCATCTGGCACAACATTTGCCTTTACAAATGATAAAAGGATTCAACAGAGGTTGGCTTTGTATCAAGGAGTGTGCCCCATATACATGCAATTCTCTGAGGATGCTGAGCAGACCTTTACTGATGCCTTAACTATGCTGCAGAGTCAAGGAATGGTGAAGGAAGGAGAAGAGGTAGCACTCCTTCAGAGTGGGAGACAACCCATATGGCGGTTCCCATCTACTCACAACATTCAAGTCCGTAAAGTGTAG 1611 42.58 MSQVVATRSIHSTFPCPSSGSVQERLDRARSFGVGSKVLTHEKKSWNFSYRRSLITSKKAAQAEVVPVSPQDAHKVDEQFEHIRAVQQLGDTPVGIWSKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVREYNAQSQDNCIAIMLDTKGPEVRSGDLPQPILLESGQEFTFTIRRGVSTADTVSVNYDDFVNDVEVGDMLLVDGGMMSLMVKSKTEDSVLCEVIDGGELKSRRHLNVLGKSATLPSIIGCDADIHVIVKIESVYSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRGMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVKVMHTVALRTEATIEGGRMPFNLGQTFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTTFAFTNDKRIQQRLALYQGVCPIYMQFSEDAEQTFTDALTMLQSQGMVKEGEEVALLQSGRQPIWRFPSTHNIQVRKV* 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11731178 11736443 - Chy6G118050.1 Chy06g01277 228986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01277 536 Pfam Pyruvate kinase, barrel domain 104 274 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Chy06g01277 536 Pfam Pyruvate kinase, barrel domain 275 402 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Chy06g01277 536 Gene3D - 104 273 IPR040442 -
Chy06g01277 536 PANTHER PYRUVATE KINASE 273 536 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Chy06g01277 536 PANTHER PYRUVATE KINASE 37 271 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Chy06g01277 536 Gene3D - 173 268 IPR015806 GO:0004743|GO:0006096
Chy06g01277 536 SUPERFAMILY PK beta-barrel domain-like 173 264 IPR011037 -
Chy06g01277 536 Pfam Pyruvate kinase, alpha/beta domain 424 516 IPR015795 -
Chy06g01277 536 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 94 401 IPR015813 GO:0003824
Chy06g01277 536 Gene3D - 409 536 IPR036918 -
Chy06g01277 536 SUPERFAMILY PK C-terminal domain-like 385 536 IPR036918 -
Chy06g01277 536 Gene3D - 275 393 IPR040442 -
Chy06g01277 536 PANTHER PLASTIDIAL PYRUVATE KINASE 2 273 536 - -
Chy06g01277 536 PANTHER PLASTIDIAL PYRUVATE KINASE 2 37 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01277 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101206887 1009.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00061 Chy-Chr4:639485 Chy06g01277 Chy-Chr6:11731178 0 dispersed
Chy06g01277 Chy-Chr6:11731178 Chy07g01743 Chy-Chr7:21085992 2.70E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01277 Chy_Chr06 FPKM 314.07489 320.450409 2.581762 3.150516 2.378252 2.426107 2.012862 16.016432 16.13504 13.067287