Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01279 ATGGAAAATATGCAGTATGCTGAGGAGCTCGTGAGGGAGTTCCTTGTCTTTAGGGGGTTTACAAGTGCTCTTCAATCTTATGAGAGTGAGCTTAGCACAGATATTGGAAAAGGTTTCCAAGTGGACAGGATTTTAGATTTAATCTTTTCAGTTTATATACCCAAGTTTGAGGCAGAAAAGTTGGTGGGGCTACTTGGTTTTTTCAAGCAGTGCCTTGCTTCATCATCTGACAATACACTCCTTTCAACTGTGTCAAAGTTGGAGGTTTCCATCCTTCGTTATTATATGGTACATGCCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTTCTTAAAATACATGGCAATGATCTACTGCAGAGGACTAAAGATTGGACTCCATGGTTTGAAAAAAATTTCTTAACAAAACCACGCATTCCTGCCCTGCTAAAGCTCAGTTCAGAGAAAAATACAGTTAATCATCTGAAAAGAGATATCAAGCAGTTAAACCTTAAATTAGCTCAACTTCAGGCTTTATTGGAGGAAAAGGAAGCTCATCTTTGCAACTTAAGAAGCCTGGTGAACAGTTCTCCAAATGTGATGCACGAAGAGAATGCCACTTCATCAAATGATGCTCTGGAGACTTGTCCTCCTCCAACTACACAAGTTGGGGAAACACAACTGGCTCGAGATGGGGTTTTAGCTGGCTCTGACAAGTATACTGCTTCAAATGAAGCTTCAAGTTCTTTATTAACTAGTTGCTCAGGAGACGGTGAAGTTGGTGATTCTAGTCATAGTTGTGAAGATGGTTGCCAAATGGTGAATAGCGGAGAAGTCCATGTACAAGAAGACTTTCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGCCGTTGCCGTTTTTCTGCATCTGGAAACAACGTAGCAAGTGCTTCTTTGGATGGTACAGTCAGGATATGGACATATGACTCATCCACTCCATCATCTAGAAATGCAACAATTTACTGTGGGGCAGAGATTATGTCACTTGATTGGGAGTGTAAATCTGATCGCCTACTTCTCATAGGGACTGCTGATGCGGGCATTAAAGCATGGAATGTTGATGCAAAGAGAGTTGTGTGTGATCTCAACACGACCGATATGTTCCCTAGTGTGTTGGATATCAAATGCAGTCCTGTTGAATCTATCTTCGTATCTGCAGCAGCATCTAGAGGGCATGGTACAAGTTATGTGGATAGTTTGGGGTTTGCTTCACTCACAGTATGGAATATGAGAACTTGGAAGTCAATGACAGTCCTTCCTTTGGGTAAGGATCCTCCTGCAATCACTTCAATGTGCTTCAATCATAATGGGAAGATCTTAGCAGCTGCTGCTACCGATGGAATGATTCACATGTTTGACATGTCTGCCTGTCTACAAATTACAGGGTGGCCGGCTCATGATTCTGCCATTAACTCGATTCTTTTCGGGCCAGATGAAACTAGCATCTTTACATTAGGGTCAGATGGCAAGATATTTGAATGGAGCTTGCATAATCAAGGTCAAGTTCTGTGGTCAAGAAATAATAGCAGGTTTTGCGATTCTGAGAGCTCTCTATCTCTGAGACATGAAATGACTTTGGATGCAAATGGAAAAAGACTCTTGGCTACATCAAATTCAGTGAGAGCTCCCATATACCAGGTGGGTGGTCGTGTGGGCGGATTGAAAACTCTTCCACATACAGCAGCGATAACGACGGTTGATTGGCACCCAACTTTGCCTGTGTTCTTGACTGGATCTGCGGACCACTCAATTCGAGTTACGTCTATTTCTTGA 1818 42.3 MENMQYAEELVREFLVFRGFTSALQSYESELSTDIGKGFQVDRILDLIFSVYIPKFEAEKLVGLLGFFKQCLASSSDNTLLSTVSKLEVSILRYYMVHAIQSGRTDKVLEFLKIHGNDLLQRTKDWTPWFEKNFLTKPRIPALLKLSSEKNTVNHLKRDIKQLNLKLAQLQALLEEKEAHLCNLRSLVNSSPNVMHEENATSSNDALETCPPPTTQVGETQLARDGVLAGSDKYTASNEASSSLLTSCSGDGEVGDSSHSCEDGCQMVNSGEVHVQEDFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSSTPSSRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPSVLDIKCSPVESIFVSAAASRGHGTSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTLGSDGKIFEWSLHNQGQVLWSRNNSRFCDSESSLSLRHEMTLDANGKRLLATSNSVRAPIYQVGGRVGGLKTLPHTAAITTVDWHPTLPVFLTGSADHSIRVTSIS* 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11743407 11750639 - Chy6G118070.1 Chy06g01279 228988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01279 605 Gene3D - 409 605 IPR015943 GO:0005515
Chy06g01279 605 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 331 IPR001680 GO:0005515
Chy06g01279 605 ProSiteProfiles Trp-Asp (WD) repeats profile. 478 511 IPR001680 GO:0005515
Chy06g01279 605 ProSiteProfiles Trp-Asp (WD) repeats profile. 571 605 IPR001680 GO:0005515
Chy06g01279 605 SUPERFAMILY WD40 repeat-like 281 601 IPR036322 GO:0005515
Chy06g01279 605 SMART WD40_4 469 510 IPR001680 GO:0005515
Chy06g01279 605 SMART WD40_4 328 367 IPR001680 GO:0005515
Chy06g01279 605 SMART WD40_4 565 603 IPR001680 GO:0005515
Chy06g01279 605 SMART WD40_4 427 468 IPR001680 GO:0005515
Chy06g01279 605 SMART WD40_4 283 322 IPR001680 GO:0005515
Chy06g01279 605 MobiDBLite consensus disorder prediction 193 218 - -
Chy06g01279 605 Coils Coil 146 180 - -
Chy06g01279 605 Gene3D - 149 407 IPR015943 GO:0005515
Chy06g01279 605 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 571 605 - -
Chy06g01279 605 Pfam WD domain, G-beta repeat 571 601 IPR001680 GO:0005515
Chy06g01279 605 Pfam WD domain, G-beta repeat 288 321 IPR001680 GO:0005515
Chy06g01279 605 Pfam WD domain, G-beta repeat 440 468 IPR001680 GO:0005515
Chy06g01279 605 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 325 - -
Chy06g01279 605 PANTHER OS05G0299300 PROTEIN 1 604 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01279 K24760 WDR91; WD repeat-containing protein 91 - csv:101209643 1153.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01279 Chy-Chr6:11743407 Chy02g00792 Chy-Chr2:4950095 2.54E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01279 Chy_Chr06 FPKM 1.044332 1.294287 0.0 0.412214 0.0 1.177256 0.266356 2.399692 2.137965 2.138719