Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01280 ATGGCCGGTCAAATTGGTATCAGATCGAGGTTGTTTGCTAGTGATCGAAATCAAGTATGGCTTTCTGATAATCGTACATTTGCATTTGGATTTAGTCCATTAAGTAGTAGTGGTGATAATGTTAATGATCAATTTCTACTTGCTATTTGGTTTGCGGAGCTTCCAGGAGATCGCACTGTAATATGGTCAGCGAATAGAAACTCTCCAGTCTCCAAGAATGCGATTGTGGAGCTCGACGTCACCGGAAACCTCATCCTCACCGACGGTGCTGCCGCTGCCGCCGCCGTCGTCTGGTCTTCCAACACCTCTGGAGATGGCGCAGAGTATGCCGTCATGTCGGAATCCGGAAATTTTATCCTCTTCAACGCTGAACGAAGCCCTGTTTGGCAGAGCTTTTCACACCCTTCTGATACCCTTCTCCCAAATCAACCTCTATCGGTCTCTTTAGAGCTAACAACATCAAAATCCCCTTCCCATGGCGGATATTATACCCTAAAAATGCTCCAACAGCGCACCACTCTCAAACTTGCCTTGACGTTCAATTTGCCTGAAAGTTACGAGGGTTTGCCTGAATCTTACGCAAATTACTCGTACTGGTCCGCCCCTGAAATTTCCAATGTAACAGGGGAAGTCATTGCTGTTTTAGATGAAGGTGGAAGCTTCGGTGTGGTGTATGGTGACTCCTCTAATGGCGCGGTTTATGTTTACAAGAACGATAACGATAATGGGGGATTGTCAGCATCGACAAATCAGTCGATTCGTAATGTACGCACACAAGTTGTTCGACGATTGACCTTAGAGAGTAATGGGAACTTGCGTTTGTATCGCTGGGATGATGATGTCAATGGGTCTCGCCAATGGGTGCCAGAATGGGCGGCAGTTTCAAATCCTTGTGATATTGCTGGAATTTGTGGAAATGGAATTTGTTATTTGGATAAAAGCAAGACGAATGCGTCTTGTTCTTGCTTACCGGGGACTTTCAAGGACAACGGCGGCAGCCAGTGCTTTGAAAATTCATCGTCGGTGGGGAAATGTGGCGGCCAAAATCATCAATCTTCCTCGACTCAGTTTAGGATTTTTCCTGTTCAGCAAACAAATTATTATTACTCTGAGTTCTCTGTGATTGCAAATTACAGCGATATCAACACAGTAGCCAAATGTGGTGATGCTTGCTTAACTGATTGTGAGTGTGTTGCTTCTGTTTATGGGCTTGATGATGAGAAGCCTTATTGTTGGGTGTTGAGAAGCTTAGATTTTGGCGGATTTGAGGATGCTGGTTCGACTCTGTTTGTTAAGGTCAAGTCTAATGGCTCAATACCAGAAGCCAATGGGCCAGGAGGTGGAGGAGATTCTTCAGGAAGTGCTAAAGAAAAGGCTACGGTAATTCCTATTGTTCTGAGTATGGCTTTTCTGATTGGGCTGCTGTGTCTGTTGTTATATTATAATGTTCGTAGAAGGAGAGCTATGAAGAGAGCCATGGAAAGCTCTCTCATCTTGTCTGGTGCTCCCATTAGTTTTACCCACCGTGATTTGCAGGTCCGGACGAACAATTTCTCTGAGGTTCTTGGTACAGGGGGATTTGGAAGTGTATATAAAGGAAGCCTTGGAGATGGGACTCTTGTAGCTGTGAAGAAACTTGACAGAGTTTTTCCTCATGGAGAGAAAGAGTTTATAACTGAAGTTAACACAATTGGATCTATGCATCACATGAACTTGGTTCGGCTCTGCGGATACTGCTCAGAAGGATCACATAGGCTTTTAGTTTATGAGTTTATGAAAAATGGTTCATTAGACAAGTGGATATTTCCATCACATCATAATCAAGACAGAAATTTAGATTGGTCGACTCGGTTCCACATAGCAGTTGGCACAGCACAAGGGATTGCTTATTTCCATGAGCAATGCAGGAATAGAATCATACACTGTGATATCAAGCCAGAAAACATTTTGTTGGATGAAAACTTTTGTCCCAAAGTTTCAGATTTTGGTCTGGCTAAGCTGATGGGAAGAGAGCATTCACATGTTGTAACAATGGTGAGAGGAACAAGAGGGTATTTGGCTCCAGAGTGGGTTAGTAATCGCCCCATCACTGTTAAAGCTGATGTTTACAGCTATGGGATGCTTCTCTTGGAGATTGTTGGTGGCAGGAGAAACCTTGATATGTCTTTTGATGCTGAAGACTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGAGGAATGGGACACATTTCAAAGTCGCAGATAGGAGACTAGAGGGTGCAGTGGAGGAAGAAGTGCTTATGAGAGCATTAAAAGTTGCATTTTGGTGCATTCAAGATGAAGTTGTCACGAGACCGACGATGGGTGACATTGTGAGGATGTTGGAAGGATCAATGGATGTCGACATGCCACCAATGCCACAAACGGTGGTGGAGCTGGTTGAGGAAGGGTTGGATCAAGTTTATAGAGCCATGAAAAGAGACACCAATCAGTCAAGTTCCTTCACCATTAATAGCCAACCTTCATCTTCTTTGGCTACCTGCAGCCATTCCACAATCTCTCCAAGATAG 2550 44.16 MAGQIGIRSRLFASDRNQVWLSDNRTFAFGFSPLSSSGDNVNDQFLLAIWFAELPGDRTVIWSANRNSPVSKNAIVELDVTGNLILTDGAAAAAAVVWSSNTSGDGAEYAVMSESGNFILFNAERSPVWQSFSHPSDTLLPNQPLSVSLELTTSKSPSHGGYYTLKMLQQRTTLKLALTFNLPESYEGLPESYANYSYWSAPEISNVTGEVIAVLDEGGSFGVVYGDSSNGAVYVYKNDNDNGGLSASTNQSIRNVRTQVVRRLTLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICYLDKSKTNASCSCLPGTFKDNGGSQCFENSSSVGKCGGQNHQSSSTQFRIFPVQQTNYYYSEFSVIANYSDINTVAKCGDACLTDCECVASVYGLDDEKPYCWVLRSLDFGGFEDAGSTLFVKVKSNGSIPEANGPGGGGDSSGSAKEKATVIPIVLSMAFLIGLLCLLLYYNVRRRRAMKRAMESSLILSGAPISFTHRDLQVRTNNFSEVLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSHHNQDRNLDWSTRFHIAVGTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAYKEMRNGTHFKVADRRLEGAVEEEVLMRALKVAFWCIQDEVVTRPTMGDIVRMLEGSMDVDMPPMPQTVVELVEEGLDQVYRAMKRDTNQSSSFTINSQPSSSLATCSHSTISPR* 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11752691 11758246 - Chy6G118080.1 Chy06g01280 228989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01280 849 Gene3D Transferase(Phosphotransferase) domain 1 592 797 - -
Chy06g01280 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Chy06g01280 849 Gene3D Phosphorylase Kinase; domain 1 481 591 - -
Chy06g01280 849 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 168 IPR036426 -
Chy06g01280 849 Pfam S-locus glycoprotein domain 251 325 IPR000858 GO:0048544
Chy06g01280 849 SUPERFAMILY Protein kinase-like (PK-like) 496 789 IPR011009 -
Chy06g01280 849 PANTHER OS07G0415500 PROTEIN 2 849 - -
Chy06g01280 849 SMART blect_4 10 135 IPR001480 -
Chy06g01280 849 ProSiteProfiles Bulb-type lectin domain profile. 12 133 IPR001480 -
Chy06g01280 849 CDD STKc_IRAK 522 790 - -
Chy06g01280 849 MobiDBLite consensus disorder prediction 823 849 - -
Chy06g01280 849 CDD B_lectin 17 135 IPR001480 -
Chy06g01280 849 Pfam D-mannose binding lectin 59 149 IPR001480 -
Chy06g01280 849 PIRSF SRK 3 842 IPR024171 GO:0004674
Chy06g01280 849 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 2 849 - -
Chy06g01280 849 ProSitePatterns Protein kinases ATP-binding region signature. 522 545 IPR017441 GO:0005524
Chy06g01280 849 Gene3D - 13 134 IPR036426 -
Chy06g01280 849 SMART serkin_6 516 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g01280 849 Pfam Protein kinase domain 519 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy06g01280 849 ProSiteProfiles Protein kinase domain profile. 516 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01280 - - - csv:101209399 1672.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00306 Chy-Chr4:2732288 Chy06g01280 Chy-Chr6:11752691 3.08E-80 dispersed
Chy04g00307 Chy-Chr4:2737725 Chy06g01280 Chy-Chr6:11752691 1.78E-80 dispersed
Chy05g00105 Chy-Chr5:803123 Chy06g01280 Chy-Chr6:11752691 2.36E-95 dispersed
Chy06g01280 Chy-Chr6:11752691 Chy09g00809 Chy-Chr9:10800686 1.35E-98 dispersed
Chy06g01280 Chy-Chr6:11752691 Chy07g01606 Chy-Chr7:20204685 7.14E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g820 . . . . . . . . . . . . . . . . . Bhi01g01429 . . . . . . . . . . . . . . . . . Lsi05g01175 . . . . . . . . . . . . . . . . . . Cpe09g00053 . . . . . . . . . . . . . . . . . Chy06g01280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71336 PF00069 Pkinase 5.20E-47 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01280 Chy_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.777318 0.441753 0.0