Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01297 ATGGCGACAAAGATCGACGGAATCGAAGAGCAAGAAATTTCAAAGCTTGAAGAAGGCATTGTCCTTTCCTCCCTTCCTCGTTCCTGTCCCTCCAATTCAGTCGTCATCATCCAAAAGGTAATCGCGGAGTTGATCGGGACGTACTTCGTGATCTTCGGGGGATGTGGGGCGGTGGTGGTGAACAAAATATACGGATCAGTGACATTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTAATGGTAATGGTGTATTCGGTGGGACATGTCTCTGGAGCGCATTTCAACCCTGCTGTTACTCTTACATTCGCCCTTTTTCGTCGCTTCCCCTTCTGGCAGGTGCCAATATACACAGGAGCTCAACTAATGGGGTCCCTTCTCGCAAGCTGCACATTGGATCTAATGCTTGAAGTGACCCCAGAAGCCTTCTTTGGGACAGTGCCCGTTGGATCCAATGTTCAATCTTTGGTTCTTGAAATTATCATCACATTTCTCTTGATGTTTGTCATCTCTGGCGTCTCCACTGATAACAGAGCCGTAGGAGAGTTGGGTGGAGTTATAGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCGATTTCGGGAGCTTCTATGAATCCAGCTAGGAGCCTTGGACCAGCAATAGTGAAACGGCAGTTTAAAGGATTATGGGTTTACATAGTAGGACCCTTGATCGGAGCGGTCGCCGGCGGATTTGTTTATAACCTCATGAGATACACAGACAAGCCACTGCGGGAGATCACCAGAAGCACCTCATTCCTCACCGGCACTCACAAATCATAA 810 48.15 MATKIDGIEEQEISKLEEGIVLSSLPRSCPSNSVVIIQKVIAELIGTYFVIFGGCGAVVVNKIYGSVTFPGICVVWGLIVMVMVYSVGHVSGAHFNPAVTLTFALFRRFPFWQVPIYTGAQLMGSLLASCTLDLMLEVTPEAFFGTVPVGSNVQSLVLEIIITFLLMFVISGVSTDNRAVGELGGVIVGMTILLNVFVAGPISGASMNPARSLGPAIVKRQFKGLWVYIVGPLIGAVAGGFVYNLMRYTDKPLREITRSTSFLTGTHKS* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12116921 12120043 - Chy6G118250.1 Chy06g01297 229006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01297 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g01297 269 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g01297 269 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g01297 269 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g01297 269 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g01297 269 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g01297 269 SUPERFAMILY Aquaporin-like 36 256 IPR023271 -
Chy06g01297 269 TIGRFAM MIP: MIP family channel proteins 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g01297 269 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g01297 269 PANTHER AQUAPORIN NIP2-1 29 257 IPR034294 -
Chy06g01297 269 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Chy06g01297 269 Pfam Major intrinsic protein 33 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy06g01297 269 PANTHER AQUAPORIN NIP4-1-RELATED 29 257 - -
Chy06g01297 269 Gene3D Glycerol uptake facilitator protein. 16 256 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00204 Chy-Chr2:1380057 Chy06g01297 Chy-Chr6:12116921 1.75E-30 dispersed
Chy04g01539 Chy-Chr4:21973861 Chy06g01297 Chy-Chr6:12116921 1.05E-69 dispersed
Chy06g00608 Chy-Chr6:4147482 Chy06g01297 Chy-Chr6:12116921 3.14E-46 dispersed
Chy06g01297 Chy-Chr6:12116921 Chy07g01561 Chy-Chr7:19849649 3.18E-58 dispersed
Chy06g01297 Chy-Chr6:12116921 Chy04g02024 Chy-Chr4:25910361 1.53E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01297 K09874 - csv:101215315 507.294