Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01299 ATGGCCCTTTATTCTGGCGCATTCTGCTTCCATGGTGTTCCTACTGTTACTCTTGAATCTTTGAGAAACAAGCAATGGGCAGTGAAATCTTATGGGATTTCGCGGTCCCGTGTAGTTTCCAAGTCCCAGTTGAAAGTGAAAGGCAAGTTCCACTTGAAGGCATTTTCTGGAGATGGCGGTTCACTGGAGTCAAGTGATTCATCTCTCGTGGTTTGTTTTGGAGAAATGTTGATTGATTTTGTCCCTACTATTAGTGGACTGTCTTTAGCTGAGGCACCTGCATTCAAAAAGGCTCCAGGGGGTGCGCCTGCAAATGTTGCTGTTGGCATAGCTCGTCTTGGTGGCTCATCCGCTTTTATAGGCAAGGTTGGTGCAGATGAATTTGGTTACATGCTTGCTGATATATTGAAGGAAAACAATGTGTGCAATGAAGGGATGCTGTTTGATCCTGGTGCACGAACTGCTTTAGCATTTGTTACATTGAGGAGTGATGGGGAGCGCGAGTTCATGTTTTATCGCAACCCTAGTGCTGACATGTTACTTGAGGAATCTGAACTCAATTATGATTTAATCAGGAAGGCAAAGATCTTCCATTATGGTTCTATCAGTCTTATTACTGAACCATGCAAGTCTGCTCACATTGCCGCTGCAAAAGCCGCAAAAGATGCTGGTGCAGTTCTTTCCTATGATCCGAATCTGAGGCTCCCTCTGTGGCCTTCTGCAGATAGTGCAATTGAAGGGATTCTGAGCATATGGGAGACCGCTGATATTATTAAGATAAGTGAAGAAGAGATTAGTTTTCTAACAAGAGGAGAAGATCCATTTGATGATGCTGTTGTTCGTAAACTGTTTCATCCAAATCTTAAATTGCTTCTGGTCACTGAAGGTCCTGGCGGTTGTAGATATTACACCAAGGAATTCAGTGGAAGAGTTAAGGGTCTAAAGGTGGATGCAGTTGACACCACTGGTGCAGGGGATGCTTTTGTTGCTGGCGTTTTGTCTCAGCTAGCAACTGACCTCTCTTTGCTTCAGAAAGAGGACAAACTTAGAGATGCACTTCTGTTTGCTAATGCTTGTGGTGCATTGACTGTTAAGGAGAGAGGGGCCATCCCTGCTTTACCAAACAAAGATGCTGTTCAGAATGCAATCTTCAAAACTGTGTCCTAA 1167 44.04 MALYSGAFCFHGVPTVTLESLRNKQWAVKSYGISRSRVVSKSQLKVKGKFHLKAFSGDGGSLESSDSSLVVCFGEMLIDFVPTISGLSLAEAPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVCNEGMLFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLEESELNYDLIRKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGAVLSYDPNLRLPLWPSADSAIEGILSIWETADIIKISEEEISFLTRGEDPFDDAVVRKLFHPNLKLLLVTEGPGGCRYYTKEFSGRVKGLKVDAVDTTGAGDAFVAGVLSQLATDLSLLQKEDKLRDALLFANACGALTVKERGAIPALPNKDAVQNAIFKTVS* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12143925 12149078 + Chy6G118270.1 Chy06g01299 229008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01299 388 Pfam pfkB family carbohydrate kinase 69 375 IPR011611 -
Chy06g01299 388 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 320 333 IPR002173 GO:0016773
Chy06g01299 388 Gene3D - 66 386 IPR029056 -
Chy06g01299 388 PRINTS Ribokinase signature 291 302 IPR002139 GO:0016301
Chy06g01299 388 PRINTS Ribokinase signature 250 265 IPR002139 GO:0016301
Chy06g01299 388 PRINTS Ribokinase signature 95 114 IPR002139 GO:0016301
Chy06g01299 388 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 100 124 IPR002173 GO:0016773
Chy06g01299 388 PANTHER PUTATIVE-RELATED 50 386 - -
Chy06g01299 388 CDD bac_FRK 69 370 - -
Chy06g01299 388 SUPERFAMILY Ribokinase-like 70 381 IPR029056 -
Chy06g01299 388 PANTHER HEXOKINASE FAMILY MEMBER 50 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01299 K00847 E2.7.1.4, scrK; fructokinase [EC:2.7.1.4] - csv:101213621 687.952
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g01299 Chy09g01388 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01299 Chy-Chr6:12143925 Chy09g00947 Chy-Chr9:12224130 5.89E-171 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g757 . . . . . . . . . . Cma02g01080 Cma15g01076 . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01388 . . . . . . . . . . Cmo02g01097 Cmo15g01133 . . . . . Cpe13g00113 . . . . . . . . . . . . . . . . Chy06g01299 Cme09g01933
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011225 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01299 Chy_Chr06 FPKM 1.828338 2.287068 3.080349 2.254116 4.526612 6.858507 3.623071 7.026115 6.325449 8.095622
Chy06g01299 Chy_Chr00 FPKM 7.292958 7.181609 1.013173 0.652944 0.766811 1.565545 1.289004 2.384562 0.961365 0.0