Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy06g01325 | ATGGAGAATTTAATGGGATTGTTGAGAATTCATGTGTTTAGAGGCGTGAATCTTGCTAAATTGAAGACTCGGGTAGTGAAGCAAAATATAAACCCAGAGTGGAACGAAGATCTAACTCTATCAATCCAAGACCCAAGTCTCCCTGTGAATGTGCTTGTATACGACAAAGATCTATTTTCGCTTGACGATAAGATGGGGGATGCAGAGTTTGATGTTCGGCCATTTGTGGAAGCCGTAAAGATGAGATTGAACAATCTCCCAAGTGGAACCATCATAAGAAAGATTCAACCAAGCAGGGAGAATTGTTTGTCTGAAGAAAGTTGCATAATTTGGGTAAATGGACAAGTTATTCAAAAAATGTTTCTAAGGTTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAATTGCAATGGATTGATATTCCTGGCTCTAGAGGATTGTAG | 444 | 39.19 | MENLMGLLRIHVFRGVNLAKLKTRVVKQNINPEWNEDLTLSIQDPSLPVNVLVYDKDLFSLDDKMGDAEFDVRPFVEAVKMRLNNLPSGTIIRKIQPSRENCLSEESCIIWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL* | 148 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 12523606 | 12525072 | - | Chy6G118530.1 | Chy06g01325 | 229034 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy06g01325 | 147 | Gene3D | C2 domain | 3 | 145 | IPR035892 | - | |
| Chy06g01325 | 147 | ProSiteProfiles | C2 domain profile. | 1 | 85 | IPR000008 | - | |
| Chy06g01325 | 147 | Pfam | C2 domain | 19 | 74 | IPR000008 | - | |
| Chy06g01325 | 147 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 139 | IPR035892 | - | |
| Chy06g01325 | 147 | SMART | C2_3c | 7 | 84 | IPR000008 | - | |
| Chy06g01325 | 147 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 145 | IPR044562 | - | |
| Chy06g01325 | 147 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 3-LIKE | 1 | 145 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy06g01325 | Chy-Chr6:12523606 | Chy09g00845 | Chy-Chr9:11264366 | 4.16E-57 | dispersed | |
| Chy06g01325 | Chy-Chr6:12523606 | Chy12g01395 | Chy-Chr12:18082373 | 8.18E-69 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy06g01325 | - | - | csv:101218477 | 285.034 |