Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01338 ATGATCTTTTCATGGAGGAAAAACAAATTGGGGTTTCTTACAAAGTTGAAGAAAGAACTTCCAGGTGTCGATTCCGGTTCGGAAATTGCGATTCCTTCACATTATATGTGTCCGATTTCGCTTGATTTGATGAAGGACCCTGTGATTTTGTCCACTGGGATTACATACGATAGAGAGAGTATCGAGAAGTGGATTGATGGGGGAAATTTTTCATGTCCTGTGACGAAACAGGATTTGACTGTTTTCGACCTAATCCCTAATCATGCGTTGAGGAGGTTGATCCAAGATTGGTGTGTTGCGAATCGTTCATACGGGATTGAACGGATTCCGACGCCGCGGATTCCGGTCTCCCCGTATGAAGTTAAGGAGATTTGTTCGAGAATATCAATCGCGACTCAAAGAAGCGATTTGAAGAGGTGCAGTGAATTGATGGGTAAGATCAGGAATTGGGCCAAAGAGAGCGAGAGGAATCGGAGGTGTATTGTAAATGGAGGAACTGGGGATGTTTTAGCAGCCTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTATTGGTTTTGACTTGTGTATATCCAGTCGCCATTGAAGGCTTATCTAAGCTTGGATCTGCGGATTCTTTGAAATGCTTGGTTTCCTTCTTAATCGGTAAAGATCTCTCTCCCAAACAGAGCGCAATTTTTGTTCTGAAAGAACTATTGGCAGCTGATCGAAGATATGTTAATTCATTGGCTGCCATTGAAGGAGTATCTGAAGCTTTAGTTAGCATTATCAGGGATCCTCTTTGCCCCTCTGCTACAAAATCATCCCTTACAGCCATTTTCTACATGATTTTACCATCAGATATTGGGGAGAAAATGGCATTGAAATTTGTGGAACTCGGCTTGGTCTCTCTCCTACTAGAATTTTTGGTAGATGCAGAGAAAAGTTTATGTGAGAAAGCTTTGGGAATTTTGGATGGAACTTGTGATTACAAACAAGGGAGAGAGAAGCTTTACAATGATGCACTAACTATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGTTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTCTGCAAGAGTGGTGAGAAGGGCGAGAATGAGGTGAGAGTTGAAGCAGCCCAACTGGGTGCTTTCCAGAAGATATTGGTTCTCTTGCAGGTTGGTTGTGGTGGTGACATGAAAGACAAGGTCACTGAGATGTTGAAATTATTGAATCTCTACAAAGATAGGCTAGATTGTATTGATTCGTCCATGCATTTTAAGTACTTGAAGAAATCATTTTGA 1329 41.46 MIFSWRKNKLGFLTKLKKELPGVDSGSEIAIPSHYMCPISLDLMKDPVILSTGITYDRESIEKWIDGGNFSCPVTKQDLTVFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVSPYEVKEICSRISIATQRSDLKRCSELMGKIRNWAKESERNRRCIVNGGTGDVLAASFEHFAGVSIEKHVGLLEEILLVLTCVYPVAIEGLSKLGSADSLKCLVSFLIGKDLSPKQSAIFVLKELLAADRRYVNSLAAIEGVSEALVSIIRDPLCPSATKSSLTAIFYMILPSDIGEKMALKFVELGLVSLLLEFLVDAEKSLCEKALGILDGTCDYKQGREKLYNDALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGENEVRVEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLKLLNLYKDRLDCIDSSMHFKYLKKSF* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12838302 12839630 + Chy6G118660.1 Chy06g01338 229047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01338 442 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Chy06g01338 442 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 25 442 - -
Chy06g01338 442 SUPERFAMILY ARM repeat 216 403 IPR016024 -
Chy06g01338 442 CDD RING-Ubox_PUB 37 77 IPR045210 -
Chy06g01338 442 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Chy06g01338 442 SUPERFAMILY RING/U-box 25 107 - -
Chy06g01338 442 Gene3D - 122 417 IPR011989 -
Chy06g01338 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Chy06g01338 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Chy06g01338 442 PANTHER WDSAM1 PROTEIN 25 442 IPR045185 GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01075 Chy-Chr6:8808161 Chy06g01338 Chy-Chr6:12838302 1.88E-67 dispersed
Chy06g01338 Chy-Chr6:12838302 Chy10g00211 Chy-Chr10:5384153 6.53E-148 dispersed
Chy06g01338 Chy-Chr6:12838302 Chy05g00202 Chy-Chr5:1692654 5.83E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01338 - - csv:101220059 842.802