Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01388 ATGCCGGAAGACACCCTTCCTATAGACTATGTAATGGAAGCCGCCTCCGGACCTCACTTCTCTGGCCTCCGACTCGATGGACGTCTCGCCTCTCCGCCCTCTTCCTCAACTTCCTCTCCGGCTCACCGCTCTTCTTTTTCGTCTTCCTTTGCACAGGCCGATACCAACTCTCCCAGGCAGCCCTTTGTCATCGGTGTTTCTGGAGGTACCGCTTCTGGGAAGACGACGGTGTGTGACATGATTATCCAGCAACTTCATGATCACAGGGTTGTGCTGGTCAATCAGGACTCGTTTTACCGCGGGTTGACAGCTGAGGAACTAGAACGCGTACACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTGTAGATTGTATCGAGAAGCTAAAGAGTGGCCAACCTTACCATGTCCCAATTTATGATTTTAAAACTCACCAACGCTGTGTCGATAGTTTTCGACAGGTCAATGCATCTAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAAAGAGTCCGCAATCTGATGAATATGAAGATATTTGTTGACACAGATCCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACGGTAGAAAGGGGCAGGGACATTAACTCTGTTCTTGAACAGTATGCCAAATTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCATCAAAGAAGTATGCTGATGTGATCATACCACGTGGGGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACTAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACTGTCATTCAGTCAACATTTCAGATAAGAGGCATGCATACATTAATTCGAGATCGGGACATTTCAAAACATGATTTTGTATTCTATTCGGATCGACTCATTCGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACTGAAAAACAAGTGATCACTCCTACGGCATCTGTATACACTGGGGTTGATTTCTGCAAGAAACTATGTGGGGTATCCATTGTTCGGAGTGGTGAAAGCATGGAAAATGCACTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAATGGGAAGCAGTTGATATATGAGAAATTACCTAGTGATATATCAGAGCGACATGTCCTGCTCCTAGATCCCGTTCTTGCTACTGGCAACTCAGCTAATCAAGCAATTGATCTACTCATACAAAAGGGAGTTCCAGAAGCGCACATCATATTCCTGAACTTGATCTCTGCCCCTGAGGGAATTCACTGTGTTTGCAAACGCTTCCCATCCTTGAAAATTGTCACTTCTGAGATCGATGTTGGATTGGATGAAAATTATCGTGTCATACCCGGCCTAGGTGAATTTGGTGATCGTTACTTCGGTACCGATGATTAG 1449 44.51 MPEDTLPIDYVMEAASGPHFSGLRLDGRLASPPSSSTSSPAHRSSFSSSFAQADTNSPRQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQPYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPSDISERHVLLLDPVLATGNSANQAIDLLIQKGVPEAHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVGLDENYRVIPGLGEFGDRYFGTDD* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14346168 14355216 - Chy6G119160.1 Chy06g01388 229097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01388 482 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 479 IPR029930 GO:0004849|GO:0044206
Chy06g01388 482 CDD UMPK 63 261 IPR000764 -
Chy06g01388 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Chy06g01388 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524|GO:0016301
Chy06g01388 482 PRINTS Uridine kinase signature 91 102 - -
Chy06g01388 482 PRINTS Uridine kinase signature 207 218 - -
Chy06g01388 482 PRINTS Uridine kinase signature 193 203 - -
Chy06g01388 482 PRINTS Uridine kinase signature 61 78 - -
Chy06g01388 482 PRINTS Uridine kinase signature 136 151 - -
Chy06g01388 482 PRINTS Uridine kinase signature 229 242 - -
Chy06g01388 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Chy06g01388 482 MobiDBLite consensus disorder prediction 23 56 - -
Chy06g01388 482 MobiDBLite consensus disorder prediction 30 56 - -
Chy06g01388 482 TIGRFAM udk: uridine kinase 62 261 IPR000764 -
Chy06g01388 482 Gene3D - 57 264 IPR027417 -
Chy06g01388 482 CDD PRTases_typeI 338 453 IPR000836 -
Chy06g01388 482 ProSiteProfiles UvrC family, homology region profile. 167 250 IPR001162 GO:0009381
Chy06g01388 482 PANTHER URIDINE KINASE 16 479 - -
Chy06g01388 482 Gene3D - 265 480 IPR029057 -
Chy06g01388 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01388 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 938.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01388 Chy-Chr6:14346168 Chy08g00711 Chy-Chr8:14934183 2.25E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1189 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00494 . Chy06g01388 . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01911 . . . . . . . . . Cme09g00461
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g01111 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Chy03g01111 . 33 189 PRT Gene Family AT1G80050 72.2 9.0e-58 219.9
Chy06g02026 . 32 167 PRT Gene Family AT1G80050 77.2 4.5e-57 217.6
Chy03g01586 . 119 268 PRT Gene Family AT1G80050 70.7 6.5e-56 213.8
Chy03g01111 . 1 148 PRT Gene Family AT5G11160 80.4 8.8e-64 240.0
Chy09g01111 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Chy03g01586 . 95 234 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Chy06g02026 . 10 147 PRT Gene Family AT5G11160 72.5 2.4e-53 205.3
Chy03g01586 . 90 270 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Chy09g01111 . 7 180 PRT Gene Family AT1G27450 73.6 1.3e-71 266.2
Chy06g02026 . 6 167 PRT Gene Family AT1G27450 77.8 9.9e-69 256.5
Chy03g01111 . 11 168 PRT Gene Family AT1G27450 72.2 1.8e-62 235.7
Chy11g00327 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Chy11g00327 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Chy11g00327 . 48 531 PRT Gene Family AT4G38880 72.1 5.0e-198 687.6
Chy03g01586 . 90 270 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Chy09g01111 . 7 180 PRT Gene Family AT1G27450 73.6 1.3e-71 266.2
Chy06g02026 . 6 167 PRT Gene Family AT1G27450 77.8 9.9e-69 256.5
Chy03g01111 . 11 168 PRT Gene Family AT1G27450 72.2 1.8e-62 235.7
Chy09g01111 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Chy03g01111 . 33 189 PRT Gene Family AT1G80050 72.2 9.0e-58 219.9
Chy06g02026 . 32 167 PRT Gene Family AT1G80050 77.2 4.5e-57 217.6
Chy03g01586 . 119 268 PRT Gene Family AT1G80050 70.7 6.5e-56 213.8
Chy06g02026 . 6 99 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Chy09g01111 . 6 104 PRT Gene Family AT4G22570 81.8 6.4e-44 173.3
Chy03g01586 . 94 186 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Chy06g02026 . 7 98 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Chy09g01111 . 1 96 PRT Gene Family AT4G12440 83.3 1.3e-40 162.2
Chy03g01586 . 90 185 PRT Gene Family AT4G12440 79.2 6.2e-38 153.3
Chy03g01111 . 1 148 PRT Gene Family AT5G11160 80.4 8.8e-64 240.0
Chy09g01111 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Chy03g01586 . 95 234 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Chy06g02026 . 10 147 PRT Gene Family AT5G11160 72.5 2.4e-53 205.3
Chy03g00477 . 1 188 PRT Gene Family AT1G71750 64.8 4.4e-70 261.2
Chy06g01388 . 19 482 PRT Gene Family AT1G55810 73.3 3.0e-199 691.4
Chy06g01388 . 80 482 PRT Gene Family AT3G27440 75.4 8.3e-180 626.7
Chy06g01388 . 1 483 PRT Gene Family AT3G27190 86.4 1.8e-247 851.7
Chy08g00711 . 3 289 PRT Gene Family AT3G53900 66.6 3.9e-107 384.8
Chy06g01388 . 11 482 PRT Gene Family AT4G26510 75.4 8.6e-210 726.5
Chy06g01388 . 1 482 PRT Gene Family AT5G40870 86.3 7.0e-247 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01388 Chy_Chr06 FPKM 7.086267 6.48541 1.15549 0.978542 13.014998 14.003096 13.495082 0.061601 0.0 0.088004
Chy06g01388 Chy_Chr00 FPKM 6.211657 5.858657 1.547459 1.470483 14.237477 14.80084 15.00191 0.154572 0.0 0.183072