Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01392 ATGGTTCAGCAGACTAATGCATCCAAATTGAGATGGGGGGAGCTTGAAGATGACGATGGGGATCTAGATTTTCTTCTTCCCCCAAAGCAAATTATTGGGCCAGACGAAAATGGGTTGAAGAAAATTGTTGAGTATCAGTTTAACGAAGATGGTAACAAGGTCAAAATCACAACGACAACTCGTACACGTAAGCTCGCCCATGCTCGCCTTAGTAAACATGCCGTAGAGCGCCGTTCTTGGGCCAAGTTCGGCGATGCTGTCCATGAAGATGTCGGCAGTCGGCTCACTATGGTCTCCACTGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCCAAGGTTGCTGGTGACCCGCTAGCTCAACTTGGAAAAGGTGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCACCACAAGTTGATGGATTGGATAAGCCTGTTGCACCAGAGACTACAGCTGCTGCTCCTGGTGCAACAAAGGGAGCGTATGTTCCTCCAGGTATGAGAGCAGGGGCGGAGAGGACCGGAACTGACATGAGGCGTAGGAATGATGAAAACTCTGTTCGTGTTACCAATCTTTCGGAGGACACTAGGGAACCTGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGAATGACATGAGCAGAGGCTTTGGTTTTGTAAACTTTGTGAATCGTGAGGATGCACAAAGATCAATTAACAAGCTTAATGGATATGGTTACGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCGACTTAA 867 48.44 MVQQTNASKLRWGELEDDDGDLDFLLPPKQIIGPDENGLKKIVEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQVDGLDKPVAPETTAAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKNDMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14433995 14435420 + Chy6G119200.1 Chy06g01392 229101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01392 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Chy06g01392 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
Chy06g01392 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
Chy06g01392 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Chy06g01392 288 MobiDBLite consensus disorder prediction 173 195 - -
Chy06g01392 288 Gene3D - 180 288 IPR012677 -
Chy06g01392 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Chy06g01392 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Chy06g01392 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Chy06g01392 288 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Chy06g01392 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Chy06g01392 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Chy06g01392 288 CDD eIF3G 37 156 IPR024675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01392 Chy-Chr6:14433995 Chy12g01575 Chy-Chr12:19280358 9.15E-175 dispersed
Chy06g01392 Chy-Chr6:14433995 Chy01g02153 Chy-Chr1:26171270 1.60E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01392 K03248 - csv:101207022 548.51