Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01543 ATGGAGAATTATCAGATGTTCTTTCCTTTGTCCGATGGGGGCGGAGAACTGTCAGCCTATCATCATGCCGACATGTCGTCCGGCGGTGCTTCTGATATGTTCGGTAATTTTCAGGGTGGCGATATGGAGGCGGTAAGTGGGTTTTTGGGGATGAAAAGAGAGGTGGATGGCGGGGCGGTGGAAGTAGAGGGCGGAGGGAAAAAGAAGGGAGAGAAGAAGGTGAGGAAGCCGAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGGTATCGTTGGAGAAAATATGGTCAAAAAGCTGTCAAAAACAATAAGTTTCCGAGGAGCTATTATAGATGCACACATCAAGGGTGCAATGTGAAGAAACAAGTGCAGAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGATAACTTTGAACAAATACTGAGTAGAATGCAGATTTATAGTAATCCTTTTTGA 513 45.03 MENYQMFFPLSDGGGELSAYHHADMSSGGASDMFGNFQGGDMEAVSGFLGMKREVDGGAVEVEGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSNPF* 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17107919 17110523 - Chy6G120710.1 Chy06g01543 229252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01543 170 ProSiteProfiles WRKY domain profile. 85 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01543 170 SUPERFAMILY WRKY DNA-binding domain 82 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01543 170 Pfam WRKY DNA -binding domain 91 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01543 170 Gene3D WRKY domain 67 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy06g01543 170 SMART WRKY_cls 90 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy06g01543 170 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 54 165 - -
Chy06g01543 170 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 165 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01543 Chy-Chr6:17107919 Chy07g01479 Chy-Chr7:19127167 9.14E-60 dispersed
Chy06g01543 Chy-Chr6:17107919 Chy06g00766 Chy-Chr6:5293301 1.66E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18191 PF03106 WRKY 3.30E-26 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01543 - - csv:101219349 304.679