Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01548 ATGGATCCTAAAACCTCATCAACAACAAAGCAGCCCCAAGAAGAAGTGGTACCCAACTTTTTTAAGCTCTCACAAGAAGAAGCAGCAGAAGAAGAAGCAATCATGGGTGAAAACAAACCAGCTGAAATCAAAGATTTTCAAATAGCAATTGCAGAGAAAGAAGAAGGAAAAAAACAGTTAGCCCCCAAAAGAAGCTCCAACAAAGACCGTCACACCAAAGTTGAAGGCAGAGGCCGAAGAATCCGTATGCCAGCTCTATGTGCTGCTAGGATTTTTCAATTGACCAGAGAATTGGATCATAAATCCGACGGCGAAACTATCCAGTGGTTGCTACAGCAGGCGGAGCCGTCTATAATCGCCGCCACAGGCACCGGAACCATTCCTGCTTCTGCTCTAGCGGCGGCAGCTGGTTCTGTTTCACAACAGGGTGCTTCTTTGTCGGCCGGATTGCATCAAAAGTTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGCGACCCCATTTGGCCGCCACTCCCACTGCCCTTTGGCCCTCATCCGTCACTGGCTTTGGTTTTCAGTCTTCGACTGCCGCTGCTGCTGTTGCTGCTCAATCAGCTACTAATTTACCTAATGAAACTTCAAATTACTTTCACAAACTTGGTTTCCCACCTTTTGATTTAACCCCCACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCAAACACTCAACAATTGCCTGGTTTGGAGCTTGGATTGTCCCAAGATGGTCATATCGGGGTCATAAATCCTCAAGCTCTCAACCAAATTTACCAACAGATGGGACAACCTAGAGTTCATCAACATCACCACCAGCAACCTCCTGCTAAGGATGATTCTCAAGATTCAGCCTAG 891 47.36 MDPKTSSTTKQPQEEVVPNFFKLSQEEAAEEEAIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELDHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGRPHLAATPTALWPSSVTGFGFQSSTAAAAVAAQSATNLPNETSNYFHKLGFPPFDLTPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVINPQALNQIYQQMGQPRVHQHHHQQPPAKDDSQDSA* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17303644 17304534 + Chy6G120760.1 Chy06g01548 229257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01548 296 MobiDBLite consensus disorder prediction 53 77 - -
Chy06g01548 296 MobiDBLite consensus disorder prediction 274 296 - -
Chy06g01548 296 Pfam TCP family transcription factor 66 156 IPR017887 -
Chy06g01548 296 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Chy06g01548 296 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 295 IPR005333 GO:0003700
Chy06g01548 296 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 37 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01548 - - - csv:101222902 548.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01548 Chy-Chr6:17303644 Chy12g01554 Chy-Chr12:19166908 1.60E-37 dispersed
Chy06g01548 Chy-Chr6:17303644 Chy02g02504 Chy-Chr2:28485684 1.97E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g00651 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Chy11g02002 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 3.1e-66 249.2
Chy10g00992 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Chy12g01554 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Chy10g00749 . 47 166 TCP Transcription Factor Family AT3G47620 65.1 2.7e-36 150.2
Chy10g00749 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Chy06g01548 . 42 295 TCP Transcription Factor Family AT3G27010 54.3 2.1e-58 223.0
Chy10g00651 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Chy02g02437 CCT 40 139 TCP Transcription Factor Family AT5G60970 76.2 1.9e-39 160.2
Chy07g00740 . 30 172 TCP Transcription Factor Family AT3G02150 57.0 1.3e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18192 PF03634 TCP 3.30E-30 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01548 Chy_Chr06 FPKM 10.05662 10.352021 4.65883 4.736547 3.534781 4.349301 3.312942 3.895496 3.446481 3.016177
Chy06g01548 Chy_Chr00 FPKM 8.296206 8.558202 4.538261 4.729195 3.314243 4.368438 3.301147 3.847276 3.473834 3.228469
Chy06g01548 Chy_Chr00 FPKM 9.997061 9.952861 4.508786 4.561413 3.464951 4.3132 3.234539 3.677451 3.233999 2.890974