Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01579 ATGGGTTTTGATGATTTTTCTAAAACAGGGTTGGTGTTGGGATTAGGGCTCTCGGAATTAGCTGACGATCAAAGGACGACATTAAAGAAGAAGCCTGCACCTTGCTCCTCCGGTTCACTTGATTTTGAGCCTTGTGTTTTGACTTTGGGATTTTCCGGTGGTGGTGGCGACACTCATCGGAAAGTTATTGATCATGTGGGTGTTCATCATTTGTATCGCCAAGCATCCCCTCATAGCAGCGCTGTTTGTTCTTCGTTCTCGGGTAAGGTTAAAAGAGAGAGAGATCTGAGCAGTGAAGAAGTTGAATTGGAGAGAGCTTGTTGGAGAGTTAGTGATGAAGATGACGATGTTTGTAATAATACTAGAAAGAAACTTAGACTCTCTAAACAACAATCCGGTCTCTTGGAAGAAAGTTTCAAACAGAATAGCACGCTCAATCCTAAGCAAAAACAAGGGTTAGCAAGACAGCTAAATCTACTGCCACGACAAGTTGAAGTATGGTTTCAGAATAGGAGAGCTCGAACAAAAGTGAAGCAAACAGAAGTAGATTGTGAGTTGTTGAAGAAGTGTTGTGAGACGTTGACGGATGAAAATAGAAGATTACAAAAGGAGGTTCAAGAATTGAAGGCAATAAAGCTGGCAAAACCTGTATACATGCAGATGTCCGGGGCGTCATTAACCATATGCCCCTCATGCGAAAGGGTGGGTACTGGCGGCCATGGTGGTGTCGCGGACGGTAATTCTAATTCCAAACCCAAATTTTCAATGCCTCCTAACCCTCTCTTTTACAATCCCTTCTCCAATCCTTCAGCCGCTTGTTAG 822 43.43 MGFDDFSKTGLVLGLGLSELADDQRTTLKKKPAPCSSGSLDFEPCVLTLGFSGGGGDTHRKVIDHVGVHHLYRQASPHSSAVCSSFSGKVKRERDLSSEEVELERACWRVSDEDDDVCNNTRKKLRLSKQQSGLLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTKVKQTEVDCELLKKCCETLTDENRRLQKEVQELKAIKLAKPVYMQMSGASLTICPSCERVGTGGHGGVADGNSNSKPKFSMPPNPLFYNPFSNPSAAC* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17890031 17891070 + Chy6G121070.1 Chy06g01579 229288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01579 273 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Chy06g01579 273 Pfam Homeobox associated leucine zipper 178 211 IPR003106 GO:0006355|GO:0043565
Chy06g01579 273 Pfam Homeodomain 122 176 IPR001356 GO:0003677
Chy06g01579 273 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Chy06g01579 273 Gene3D - 126 176 - -
Chy06g01579 273 SUPERFAMILY Homeodomain-like 113 179 IPR009057 -
Chy06g01579 273 CDD homeodomain 122 179 IPR001356 GO:0003677
Chy06g01579 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 6 273 - -
Chy06g01579 273 Coils Coil 184 211 - -
Chy06g01579 273 PANTHER - 6 273 - -
Chy06g01579 273 SMART halz 178 221 IPR003106 GO:0006355|GO:0043565
Chy06g01579 273 SMART HOX_1 120 182 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01579 Chy-Chr6:17890031 Chy07g00219 Chy-Chr7:1789671 2.53E-59 dispersed
Chy06g01579 Chy-Chr6:17890031 Chy02g00808 Chy-Chr2:5048828 1.89E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18194 PF00046 Homeodomain 7.20E-16 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01579 K09338 - csv:101205848 534.643