Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01589 ATGAAGAAGCCATCGGTTAATTTGACCGTTTGCTTCATAGCTATGGTTGTGGTCGTCGTCTCCTTCTTCTTTTGTCTCGGTCACAATGGCTACCGGATTTGGACCTCACCGGTCAGGAGATATCTAAGGAACATAGACATCAACAATTCTTCGAGACTATTCAATGTCTCACTGCAAAGAAAAGATGGATATGTTATAATGGACAATGGCATTGTCCAAGTTACTCTTTCAACGCCCGATGGCGACGTGGTTGGATTGAGCTACAATGGAATCCCCAACATTCTCGAAACCAAAAACGAAGAGCAAAACAGAGGCTACTGGGACGCCGTGTGGAACAACCCAGACGAACCCATTGCCACGGACAGATTAAAAGGAGAGAGTTATGAAGTGATAATAGGGAACGAGGAGCAACTAGAAATATCGTTTAACAAAACATGGAGTTTTGGAAAAGGGAATGAGACGGCGCCTGTAAATGTGGACAAAAGGTACGTATTGCTGAGAGGAAGTTCTGGGTTTTATAGTTATGCGATATTCGCGAGGCCCATTGGGTGGCCCCAGATTGAAATGGATCAAGTTAGAATTGTTTTTAAGCTTCAAAGCCAAATGTTTGATTATATGGCTGTGTCGGACGATAGGCAAAGAGTGATGCCCACAATGAGAGACCGTGAAAATGGTGAGCCATTGGCTTTTCCCGAGGCTGTTCTTTTGACTAATCCTTCCAATGAAGAACTTAGAGGAGAGGTGGATGACAAGTACCAATACTCAACAGAGGACAAGGACAACCAGGTTCACGGCTGGATCTCCAGTGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTTGCTGGTCCGGTCAAGCAGGATCTTACCTCCCATGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGTATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTGTCTTTGTTTATCTCAACTCTGTTTCCCCTGAAGAGGATTCCCTATCCCTCTGGGAAGATGCCAAACAACAGTTGGCAATAGAAATCAACGAGTGGCCCTATACTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGCGTCGCAGGCCAGTTATTCGTTCGTGATGGGTACATCAGTAGCCGACTTATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAGACGGAAACCAAGGGCTATCAGTTCTGGACTCAAGCTGACAATCACGGCAACTTCTTAATCAATAATATCCGAGTTGGGGTTTACAATCTGTACGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATACGAGGCAAATATTACAATCGAGTTTGGGTCTGAAATCAATTTGGATGTGATGGTGTTTGATCCACCGAGACAAGGCCCTACCATCTGGGAGATTGGCTTTCCTGATCGCACTGCAGCGGAGTTTTATGTGCCTGACCCTTATCCAACTCTCATGAATAAACTATACAACAACCATGCTGACAAGTTCAGACAGTATGGCTTGTGGGAACGTTATGCAGCTATTTATCCAAATAATGATCTTGTGTTTACCGCTGGTGTCGATGATTATACAGTGGACTGGTTCTATGCTCATGTTAACAGGAACGTGGGGAATCAAACATACGAAGCGACCACTTGGGAGATCAGATTTTTATTGCAACCTGTGAACCAAACAACAAATTACACACTGCAAATTGCATTAGCATCTGCTGCTGAGTGCGAATTACAGGTTCGATTAAACAATCGAGAATCAGAGCAGTCTGGTTTTTCGACAGGAAGGATTGGAAAGGACAACGCAATTGCAAGGCATGGCATTCATGGACTTTACTGGTTATACTCCATACCTTTCCCTGGCGATCAATTTCTACAAGGAAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCGAAGGTCTCATGTACGACTACATTCGACTGGAAGCTCCACCTCTAACATGA 2049 45.92 MKKPSVNLTVCFIAMVVVVVSFFFCLGHNGYRIWTSPVRRYLRNIDINNSSRLFNVSLQRKDGYVIMDNGIVQVTLSTPDGDVVGLSYNGIPNILETKNEEQNRGYWDAVWNNPDEPIATDRLKGESYEVIIGNEEQLEISFNKTWSFGKGNETAPVNVDKRYVLLRGSSGFYSYAIFARPIGWPQIEMDQVRIVFKLQSQMFDYMAVSDDRQRVMPTMRDRENGEPLAFPEAVLLTNPSNEELRGEVDDKYQYSTEDKDNQVHGWISSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPVFVYLNSVSPEEDSLSLWEDAKQQLAIEINEWPYTFPQSEDFPSSAQRGSVAGQLFVRDGYISSRLMRASNAFVGLALPGPVGSWQTETKGYQFWTQADNHGNFLINNIRVGVYNLYAFVPGFIGDYKYEANITIEFGSEINLDVMVFDPPRQGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNNHADKFRQYGLWERYAAIYPNNDLVFTAGVDDYTVDWFYAHVNRNVGNQTYEATTWEIRFLLQPVNQTTNYTLQIALASAAECELQVRLNNRESEQSGFSTGRIGKDNAIARHGIHGLYWLYSIPFPGDQFLQGNNSIYLTQARSESPFEGLMYDYIRLEAPPLT* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18090060 18102904 + Chy6G121170.1 Chy06g01589 229298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01589 682 Gene3D - 376 478 - -
Chy06g01589 682 SUPERFAMILY Galactose mutarotase-like 63 341 IPR011013 GO:0003824|GO:0005975|GO:0030246
Chy06g01589 682 CDD RGL4_N 56 346 - -
Chy06g01589 682 Pfam Polysaccharide lyase family 4, domain II 402 474 IPR029413 -
Chy06g01589 682 SUPERFAMILY Galactose-binding domain-like 486 677 IPR008979 -
Chy06g01589 682 SUPERFAMILY Starch-binding domain-like 411 478 IPR013784 GO:0030246
Chy06g01589 682 Pfam Rhamnogalacturonate lyase family 54 248 IPR010325 -
Chy06g01589 682 CDD RGL4_M 379 475 IPR029413 -
Chy06g01589 682 Gene3D - 55 343 IPR014718 GO:0030246
Chy06g01589 682 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 680 - -
Chy06g01589 682 CDD RGL4_C 490 677 - -
Chy06g01589 682 Pfam Polysaccharide lyase family 4, domain III 488 676 IPR029411 -
Chy06g01589 682 Gene3D - 486 677 - -
Chy06g01589 682 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 59 680 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00197 Chy-Chr4:1750002 Chy06g01589 Chy-Chr6:18090060 0 dispersed
Chy04g00198 Chy-Chr4:1758057 Chy06g01589 Chy-Chr6:18090060 0 dispersed
Chy06g01589 Chy-Chr6:18090060 Chy02g00773 Chy-Chr2:4789319 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01589 K18195 - csv:101215252 1372.84