Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01600 ATGTTTTCTTGCTTCTACCGTTTGACTTTTTCAGAAGTTACTTTTTCAGCTGTCATTGTGCTGCTAGGAGTCCCATTGTTCAAGTTCCATCTTGCCAGCATTTATTTAGTTTTAGCAATGGTTCTTGTTGGGTCTTTGCAACTGTCCTATCATCTGAGACCGTGGAGAAATTATTTGCACGAAGAAAATCTTAAGTTAACGTCCCAGAGATATGGCATCCGGCTTCTGAATGTAGCCAGTTCATCGTCTCTTTTGTTTCAGAAGGACATTTGGAGCACTCATTTATTTAGCATGAAATACCCACCTAATTACACTGTGCCTTCTAGATACAATGTATTCAGGTGCCAATCATCATTGATGACAAACCAACCACTGGATCCTTCTGAGATGAAGGCTGCCATAGTGACATTGATGAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTGATTAAGTTACTTCCCCCAGTTTGTATTATACTATTTGCTGTATGGGGTCTTGGACCATTTTTGTGTTGTACAAGAAGCCTATTCCATAATGATAGTAACTGGAAGAAAAGTCGGACGTATAATGTCATGACCTTGTATCTTCAACCATTATTGCTATGGACTGGAGCCACACTTATTTGCAGAGCTTTAGATCCAATAGTTTTACGTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCGCTGTCCACTGTGCTGGCCTCTGCATATTGTTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCCAGAAATATGGGCTTTCAATTTGCATGGAAAGCTGTATATTCTGCAGTATGGGTTGCTGCTATCTCATTGTTCATGGAGCTATTAGGCTTTTCAACCCAAAAATTGCTTACAGCTGGAGGTCTTGGGACTGTATTGTTGACATTAGCTGGCCGTGAGATTTTCACCAACTTTCTTTCGAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACAAAGATTGAGGGCTACGAAGTTTCTGGTACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATCAATTTACCATGAATGTTGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATCAGCCATTTGGACGTCAATAAAATCAACAACATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATTCTGAAAATCAGGCACTTTTGATTTTGATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATACCTATGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGGCACCACGGGGCTCGACTTGCAACGCCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTGGAAAATGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCAACTTTGAATCGCCGCATGCTGATGATTGAGCCTCCTTACAAAGTTTATGGAGAAGATAGAAAACAAAGCCATAGCAGGACATCACGTACAACTGGAGAACAAAATGGTAAGTCCATTGCACGGTCATCAGGTGACAGTAAAGCAGCTAAAGAGACAATGTCATCTGATAGAAAGATAGAAGTCAAGACTGGAGGAGACGCTGATACAAAAAAGCATTCCAAAGTTTCAATGTCAGCCTCTGAAGACAAATCAAGCAATGAATTGAAACATAAACCATCATCAAAGTCTGCTGTAAGTACCTCTGATACGCCAACTTCTAATGCCAAACCAACTAAATCAGATGCTGATAATTCATTGGAAGATTCCCGTCCCAAGCAATCCAAAGACAGCTTGGGAAGTAACATGCAGAACTTCAAGCCTTCCCTTCCTGCTGTTTCCTCTCCGGAAAATGTTAAGAAACCCGGAGGAACTACTTCAGCAGCAGCTTCACAACCAAGAATCGAAGGTGAGCAGACAACAGTTTCAAATCCATCAACTAAGAAGCCTGGGGTAGAAGAGAATATAATCCTTGGTGTTGCTTTGGACGGCTCTAAGAGAACACTTCCTATTGAGGACAATGTACCTACTACCGCATCTGGAGCAAAAGATTTGGCTGCATTCAATGGAGCAACGACAGATAAGAATACGAAACGTCAGTCTCCTTCATCTCCTACCACATCTTCTAGTGAATAG 2289 41.24 MFSCFYRLTFSEVTFSAVIVLLGVPLFKFHLASIYLVLAMVLVGSLQLSYHLRPWRNYLHEENLKLTSQRYGIRLLNVASSSSLLFQKDIWSTHLFSMKYPPNYTVPSRYNVFRCQSSLMTNQPLDPSEMKAAIVTLMRFCNVLGGCPPPVIKLLPPVCIILFAVWGLGPFLCCTRSLFHNDSNWKKSRTYNVMTLYLQPLLLWTGATLICRALDPIVLRTESSQVVKQRVLNFVRSLSTVLASAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKLLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHQFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDSENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHGARLATPIRTMQKMHSDSDLENVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKSIARSSGDSKAAKETMSSDRKIEVKTGGDADTKKHSKVSMSASEDKSSNELKHKPSSKSAVSTSDTPTSNAKPTKSDADNSLEDSRPKQSKDSLGSNMQNFKPSLPAVSSPENVKKPGGTTSAAASQPRIEGEQTTVSNPSTKKPGVEENIILGVALDGSKRTLPIEDNVPTTASGAKDLAAFNGATTDKNTKRQSPSSPTTSSSE* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18425693 18434045 + Chy6G121280.1 Chy06g01600 229309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01600 762 Pfam Mechanosensitive ion channel 279 487 IPR006685 GO:0016020|GO:0055085
Chy06g01600 762 MobiDBLite consensus disorder prediction 719 762 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 647 663 - -
Chy06g01600 762 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 40 750 - -
Chy06g01600 762 Gene3D - 337 392 IPR023408 -
Chy06g01600 762 MobiDBLite consensus disorder prediction 610 632 - -
Chy06g01600 762 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 40 750 IPR045042 -
Chy06g01600 762 SUPERFAMILY Sm-like ribonucleoproteins 321 391 IPR010920 -
Chy06g01600 762 Gene3D - 236 335 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 534 704 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 741 762 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 569 609 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 670 701 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 547 568 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01308 Chy-Chr3:16081857 Chy06g01600 Chy-Chr6:18425693 0 dispersed
Chy06g01600 Chy-Chr6:18425693 Chy06g00156 Chy-Chr6:1021185 1.60E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01600 K22047 - csv:101217250 1379.0