Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01600 ATGTTTTCTTGCTTCTACCGTTTGACTTTTTCAGAAGTTACTTTTTCAGCTGTCATTGTGCTGCTAGGAGTCCCATTGTTCAAGTTCCATCTTGCCAGCATTTATTTAGTTTTAGCAATGGTTCTTGTTGGGTCTTTGCAACTGTCCTATCATCTGAGACCGTGGAGAAATTATTTGCACGAAGAAAATCTTAAGTTAACGTCCCAGAGATATGGCATCCGGCTTCTGAATGTAGCCAGTTCATCGTCTCTTTTGTTTCAGAAGGACATTTGGAGCACTCATTTATTTAGCATGAAATACCCACCTAATTACACTGTGCCTTCTAGATACAATGTATTCAGGTGCCAATCATCATTGATGACAAACCAACCACTGGATCCTTCTGAGATGAAGGCTGCCATAGTGACATTGATGAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTGATTAAGTTACTTCCCCCAGTTTGTATTATACTATTTGCTGTATGGGGTCTTGGACCATTTTTGTGTTGTACAAGAAGCCTATTCCATAATGATAGTAACTGGAAGAAAAGTCGGACGTATAATGTCATGACCTTGTATCTTCAACCATTATTGCTATGGACTGGAGCCACACTTATTTGCAGAGCTTTAGATCCAATAGTTTTACGTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCGCTGTCCACTGTGCTGGCCTCTGCATATTGTTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCCAGAAATATGGGCTTTCAATTTGCATGGAAAGCTGTATATTCTGCAGTATGGGTTGCTGCTATCTCATTGTTCATGGAGCTATTAGGCTTTTCAACCCAAAAATTGCTTACAGCTGGAGGTCTTGGGACTGTATTGTTGACATTAGCTGGCCGTGAGATTTTCACCAACTTTCTTTCGAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACAAAGATTGAGGGCTACGAAGTTTCTGGTACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATCAATTTACCATGAATGTTGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATCAGCCATTTGGACGTCAATAAAATCAACAACATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATTCTGAAAATCAGGCACTTTTGATTTTGATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATACCTATGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGGCACCACGGGGCTCGACTTGCAACGCCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTGGAAAATGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCAACTTTGAATCGCCGCATGCTGATGATTGAGCCTCCTTACAAAGTTTATGGAGAAGATAGAAAACAAAGCCATAGCAGGACATCACGTACAACTGGAGAACAAAATGGTAAGTCCATTGCACGGTCATCAGGTGACAGTAAAGCAGCTAAAGAGACAATGTCATCTGATAGAAAGATAGAAGTCAAGACTGGAGGAGACGCTGATACAAAAAAGCATTCCAAAGTTTCAATGTCAGCCTCTGAAGACAAATCAAGCAATGAATTGAAACATAAACCATCATCAAAGTCTGCTGTAAGTACCTCTGATACGCCAACTTCTAATGCCAAACCAACTAAATCAGATGCTGATAATTCATTGGAAGATTCCCGTCCCAAGCAATCCAAAGACAGCTTGGGAAGTAACATGCAGAACTTCAAGCCTTCCCTTCCTGCTGTTTCCTCTCCGGAAAATGTTAAGAAACCCGGAGGAACTACTTCAGCAGCAGCTTCACAACCAAGAATCGAAGGTGAGCAGACAACAGTTTCAAATCCATCAACTAAGAAGCCTGGGGTAGAAGAGAATATAATCCTTGGTGTTGCTTTGGACGGCTCTAAGAGAACACTTCCTATTGAGGACAATGTACCTACTACCGCATCTGGAGCAAAAGATTTGGCTGCATTCAATGGAGCAACGACAGATAAGAATACGAAACGTCAGTCTCCTTCATCTCCTACCACATCTTCTAGTGAATAG 2289 41.24 MFSCFYRLTFSEVTFSAVIVLLGVPLFKFHLASIYLVLAMVLVGSLQLSYHLRPWRNYLHEENLKLTSQRYGIRLLNVASSSSLLFQKDIWSTHLFSMKYPPNYTVPSRYNVFRCQSSLMTNQPLDPSEMKAAIVTLMRFCNVLGGCPPPVIKLLPPVCIILFAVWGLGPFLCCTRSLFHNDSNWKKSRTYNVMTLYLQPLLLWTGATLICRALDPIVLRTESSQVVKQRVLNFVRSLSTVLASAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKLLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHQFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDSENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHGARLATPIRTMQKMHSDSDLENVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKSIARSSGDSKAAKETMSSDRKIEVKTGGDADTKKHSKVSMSASEDKSSNELKHKPSSKSAVSTSDTPTSNAKPTKSDADNSLEDSRPKQSKDSLGSNMQNFKPSLPAVSSPENVKKPGGTTSAAASQPRIEGEQTTVSNPSTKKPGVEENIILGVALDGSKRTLPIEDNVPTTASGAKDLAAFNGATTDKNTKRQSPSSPTTSSSE* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18425693 18434045 + Chy6G121280.1 Chy06g01600 229309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01600 762 Pfam Mechanosensitive ion channel 279 487 IPR006685 GO:0016020|GO:0055085
Chy06g01600 762 MobiDBLite consensus disorder prediction 719 762 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 647 663 - -
Chy06g01600 762 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 40 750 - -
Chy06g01600 762 Gene3D - 337 392 IPR023408 -
Chy06g01600 762 MobiDBLite consensus disorder prediction 610 632 - -
Chy06g01600 762 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 40 750 IPR045042 -
Chy06g01600 762 SUPERFAMILY Sm-like ribonucleoproteins 321 391 IPR010920 -
Chy06g01600 762 Gene3D - 236 335 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 534 704 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 741 762 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 569 609 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 670 701 - -
Chy06g01600 762 MobiDBLite consensus disorder prediction 547 568 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01600 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101217250 1379.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01308 Chy-Chr3:16081857 Chy06g01600 Chy-Chr6:18425693 0 dispersed
Chy06g01600 Chy-Chr6:18425693 Chy06g00156 Chy-Chr6:1021185 1.60E-12 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00156 . 129 505 Mechanosensitive Ion Channel Family AT4G00290 67.1 5.3e-149 524.6
Chy03g01308 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.6 1.1e-197 686.8
Chy06g01600 . 102 761 Mechanosensitive Ion Channel Family AT5G10490 54.4 6.4e-182 634.4
Chy03g01308 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.8 2.1e-196 682.6
Chy06g01600 . 82 544 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT1G53470 55.7 9.1e-261 896.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.9e-249 857.4
Chy11g01095 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.5 1.3e-280 962.6
Chy01g00654 . 59 954 Mechanosensitive Ion Channel Family AT1G78610 55.5 3.4e-273 937.9
Chy11g01095 . 216 921 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-239 824.3
Chy01g00654 . 268 942 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.1e-222 767.7
Chy02g01258 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.2 5.5e-195 677.9
Chy07g00275 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.0e-188 657.1
Chy07g00274 . 73 729 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.9e-175 611.7
Chy07g00276 . 55 702 Mechanosensitive Ion Channel Family AT5G12080 51.2 2.4e-166 582.8
Chy05g00620 . 1 531 Mechanosensitive Ion Channel Family AT5G12080 51.2 3.3e-139 492.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01600 Chy_Chr06 FPKM 672.668396 747.495544 41.190556 36.417728 70.030022 87.462387 74.348732 0.0 0.069559 0.0