Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01612 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTCGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTTACCACTGATGTCGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGGATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGTTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCCAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAACAGTCTGCCACTCATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 768 48.57 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18609086 18616428 + Chy6G121400.1 Chy06g01612 229321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01612 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Chy06g01612 255 MobiDBLite consensus disorder prediction 183 200 - -
Chy06g01612 255 CDD PHD_AL_plant 202 251 IPR044104 -
Chy06g01612 255 PANTHER CPG BINDING PROTEIN 1 252 IPR045104 GO:0006355|GO:0042393
Chy06g01612 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Chy06g01612 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Chy06g01612 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Chy06g01612 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 252 - -
Chy06g01612 255 MobiDBLite consensus disorder prediction 163 182 - -
Chy06g01612 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Chy06g01612 255 SMART PHD_3 201 249 IPR001965 -
Chy06g01612 255 MobiDBLite consensus disorder prediction 141 201 - -
Chy06g01612 255 MobiDBLite consensus disorder prediction 141 162 - -
Chy06g01612 255 Pfam PHD-finger 202 251 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02184 Chy-Chr1:26396867 Chy06g01612 Chy-Chr6:18609086 2.48E-109 dispersed
Chy03g00663 Chy-Chr3:9234183 Chy06g01612 Chy-Chr6:18609086 2.71E-76 dispersed
Chy04g02257 Chy-Chr4:27226324 Chy06g01612 Chy-Chr6:18609086 5.90E-74 dispersed
Chy06g01612 Chy-Chr6:18609086 Chy10g00423 Chy-Chr10:10085746 3.37E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18197 PF12165 Alfin 2.50E-68 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01612 - - csv:101212601 488.419