Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01612 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTCGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTTACCACTGATGTCGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGGATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGTTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCCAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAACAGTCTGCCACTCATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 768 48.57 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18609086 18616428 + Chy6G121400.1 Chy06g01612 229321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01612 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Chy06g01612 255 MobiDBLite consensus disorder prediction 183 200 - -
Chy06g01612 255 CDD PHD_AL_plant 202 251 IPR044104 -
Chy06g01612 255 PANTHER CPG BINDING PROTEIN 1 252 IPR045104 GO:0006355|GO:0042393
Chy06g01612 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Chy06g01612 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Chy06g01612 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Chy06g01612 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 252 - -
Chy06g01612 255 MobiDBLite consensus disorder prediction 163 182 - -
Chy06g01612 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Chy06g01612 255 SMART PHD_3 201 249 IPR001965 -
Chy06g01612 255 MobiDBLite consensus disorder prediction 141 201 - -
Chy06g01612 255 MobiDBLite consensus disorder prediction 141 162 - -
Chy06g01612 255 Pfam PHD-finger 202 251 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01612 - - - csv:101212601 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02184 Chy-Chr1:26396867 Chy06g01612 Chy-Chr6:18609086 2.48E-109 dispersed
Chy03g00663 Chy-Chr3:9234183 Chy06g01612 Chy-Chr6:18609086 2.71E-76 dispersed
Chy04g02257 Chy-Chr4:27226324 Chy06g01612 Chy-Chr6:18609086 5.90E-74 dispersed
Chy06g01612 Chy-Chr6:18609086 Chy10g00423 Chy-Chr10:10085746 3.37E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1243 Blo02g01188 Blo03g00275 Bda06g00180 Bda08g00428 . . . . . . . . . . . Cpe01g00797 Cpe14g00651 . . . . . . . . . . . . . . Cone3ag0883 . Cone13ag0701 . . . . . . . . . . . Bma05g00910 . Sed07g1864 Cmo04g00939 . . . . . . . Bhi11g00926 Tan01g1498 . . . . . Cla10g00714 Cam10g0706 Cec10g0733 Cco10g0716 Clacu10g0742 Cmu10g1556 Cre10g0950 . Csa03g00676 Chy06g01612 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01612 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 1.8e-113 405.6
Chy01g02184 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.9 6.1e-93 337.4
Chy10g00423 . 8 238 Alfin-like Transcription Factor Family AT1G14510 59.3 2.7e-77 285.4
Chy03g00663 . 9 161 Alfin-like Transcription Factor Family AT1G14510 82.4 2.3e-68 255.8
Chy04g02257 . 8 215 Alfin-like Transcription Factor Family AT1G14510 58.3 6.8e-68 254.2
Chy01g02184 . 1 250 Alfin-like Transcription Factor Family AT5G26210 64.5 8.3e-98 353.6
Chy06g01612 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 7.3e-94 340.5
Chy10g00423 . 7 240 Alfin-like Transcription Factor Family AT5G26210 59.5 2.9e-82 302.0
Chy03g00663 . 1 157 Alfin-like Transcription Factor Family AT5G26210 86.0 8.1e-77 283.9
Chy04g02257 . 8 215 Alfin-like Transcription Factor Family AT5G26210 55.4 5.8e-67 251.1
Chy01g02184 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.5 9.0e-97 350.1
Chy06g01612 . 9 256 Alfin-like Transcription Factor Family AT3G42790 71.8 1.6e-90 329.3
Chy10g00423 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.3 1.5e-80 296.2
Chy03g00663 . 1 150 Alfin-like Transcription Factor Family AT3G42790 81.5 3.0e-68 255.4
Chy04g02257 . 8 215 Alfin-like Transcription Factor Family AT3G42790 56.9 3.9e-68 255.0
Chy10g00423 . 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 6.2e-111 397.1
Chy04g02257 . 1 215 Alfin-like Transcription Factor Family AT5G05610 73.6 3.4e-93 338.2
Chy01g02184 . 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 7.9e-90 327.0
Chy06g01612 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.1e-83 306.6
Chy03g00663 . 8 164 Alfin-like Transcription Factor Family AT5G05610 68.2 2.3e-57 219.2
Chy10g00423 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.1 3.5e-95 344.7
Chy04g02257 . 43 215 Alfin-like Transcription Factor Family AT3G11200 75.7 1.5e-74 276.2
Chy01g02184 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.8 3.4e-74 275.0
Chy06g01612 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.5e-69 258.8
Chy03g00663 . 44 164 Alfin-like Transcription Factor Family AT3G11200 71.9 1.8e-43 172.9
Chy06g01612 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Chy03g00663 . 1 169 Alfin-like Transcription Factor Family AT2G02470 74.0 1.9e-65 246.1
Chy01g02184 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.0e-63 238.8
Chy04g02257 . 8 135 Alfin-like Transcription Factor Family AT2G02470 73.8 1.6e-53 206.5
Chy10g00423 . 8 155 Alfin-like Transcription Factor Family AT2G02470 66.9 3.6e-53 205.3
Chy03g00663 . 1 188 Alfin-like Transcription Factor Family AT5G20510 71.4 4.3e-75 277.7
Chy01g02184 . 1 162 Alfin-like Transcription Factor Family AT5G20510 74.5 5.1e-68 254.2
Chy06g01612 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.4e-67 250.4
Chy10g00423 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 6.1e-53 204.1
Chy04g02257 . 7 157 Alfin-like Transcription Factor Family AT5G20510 61.8 3.3e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18197 PF12165 Alfin 2.50E-68 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01612 Chy_Chr06 FPKM 22.269333 23.015093 22.610355 23.694752 27.418844 30.051847 31.244167 57.539871 54.617977 53.117687