Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01631 ATGGGAATTCATTTACCTTCGCTTCTCCTCAATGCCAAGCAAATATTCAGAACACAATCTGTTTCAACAAGATGTCATTCCAACCCCTTGCCTACGCTCCAAGCACCTGTTGCCGCCAGCAACGCATCGCGCCACCGACTGGCTCTGCCTCCGTTCGATCGTGGGCCATCCAAGCGTATCCGGAAAGTTGCCGGAAATTTCACTCTCCATCTCTCTCTACAATCCGTTCCATCACAGCCGCGCGTGGCCAATCTCCATCCAGCCATTGCCACCGCTGCCATTCGCCGGATTCCGCGTTCGCCTGCCGTCGCCAGTTCGTTGCCTCTATCGCCGGATTCTTTGGTTTTGGTATGTTTTACTCACACAGCCATGTCTCTCCGCAACCATGTTGATGAAATTGACATTGAGCATCCTGCCGACAAGGAAGATGGTGTGGTTGATGAGGACATGGAAGTTCTTCAGAGAGCCTATAGGCTTGTTGGTGTTAATCCTGAGGATTATATTAATCAAAGGTTGTCATCACCTGCTGCCGGAGATGCTGATCATGGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAGATATTCAGAATCGGTTCTCGATTTTGGCTGATGAGCAGCCACAGAGTACTCTCCCACCAGTGTCTGCAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCGATACAGCGGCGCTTTGCTGCGTATGAAAGTGATACTTTGAGAAATAAACCCAATCAGTCTCGTGACTATGTTGGGTCTCTGAAGATGGATTCTGACGACATATCTGTTGAGAGCCAGACATCCTCAAAAAGGCCATCCGTGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCGTTGGCATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTGCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAGCGAAGAACAAGTTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTAATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGGAATGTATTATGGCCCAGATGAGAATTCTCATGTTGCGTGTTACAGAATGGCATTGGCAAAGTTCCCCCCTGTTGATCGAAAGAAATGGTCCATTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAGTTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATCAGTGGGCCACAAGGAGTTTATGGAGATTCAGATGATTTGGATAACATTCTTTCATCAATAAAAGACCTTGACACCCCTCCTGAAAGGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCAGGGTCGCTCGGGTGCAGAATGTGAAGCAAGGTGGTTGAATTTTGAAGACCCCCTAATTAATCGAGATCCATGGACTACAAGTGAGGATAAAAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATGGCAGTTTCATTGGGCACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGAAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTTCGAACTGCTGTTGCTATATTTGGTGTGAGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAGCTGGCACACAATGCTCTAATAGGTGGAAAAAATCGCTTGACCCAGCTAGGACAAGAAAAGGTTATTTCACTCCAGATGAAGACGTTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCCAGAAATTGGAACAAGAAAGCAGAATTTTTGCCTGGTCGGAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAGTGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCATCACGTACAGATAATGAGTGTCGGAGGAGATGGAAGAAGTTATTTCCCGATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAAACAGAGCGTCCTGCTCTTGGTCCTGCTGACTTTCGACCCAGGCCAAATACAGATTCATTATGTAACACTGATGGTCCAAGACCTGCCCCAAAAAGAAATGTGAAAACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAAAAGAGGAAATCAAATTCTCAGAGGTTTCAGACTGATGGAACTGCTCAGGTGGGTATTGCATATAATACATCTTCTGTCCCAGAAGAGGTTCAATCTTCAAAGCCTCAAAGAAAACGAAATAGACGCGGAGCTTATACTGCAAAGAGAATAGGAGTACCGGAGCTACGTTCTGACAGCGAGTGGTGTGCTAAACAGAATTTGGACACTGAGAGCCTTGGGTTGCAGCTGAATAGTAAGGAATCTGAGAGGAGCAACAGTGACTGCACCAAGACTGTTGATGAGAATATTATGGAAGTTCTTGAGAACAAAGTTGCAGAGAAGCTTACTGAAAAAAATGCATGCTTCTCAGAACCAGAAAAAAATCAAAACTCAACCGGATCTTCTGGAGTCTCGGTATTGTCGGAAATGACTAACGACTTGGTTGACTATAATCCCTCTATCCTCACAGATACAACATTGTTGGCTAGTACTACTGTGGATGATATTGAAGAATTGAAGGGGAAGAGTGCTGCAGACAGGGATTTGGATGACAGTAACAGTTTCTCGTTACCACACAGTTGCTTAGAACTCCGGACAGTTGACAGTGAAGGTGTAGACAGTTATTCTGTGGACGAATATATAGCTAAGAGCAATGGGTTTTGTAATCCCACCCAAGGCAAAAGGAAGAAAAATAGCAAAACATCAAATAACAGCCATGATAATTTGTTTATTCCTTGTCAACAAATTGAGCAAGAGACGTTGGGAACGAAGAAGCCTCATCATCATAATCAATCAAAGAAGAGAAAACATAACAATACAGGTCCAAGTACGTTAAAAACATTGGAGGCAGTTGAGGAGGTTGATGACTGCACTCTCGTGGGGTTCTTGCAAAAACGATTGAAGAGGACGGCAATGACACATAACGAGACAGTTGATTGCAGTTCTAATACTCCTGTAAAAGTTGATAATGACGATAATGAGCCTACCATTGCCTCGTTTCTTAATAAATTGAAGAGAAAAAAGCATCAGCGGCCTAGTGGTGGTGAGTTAAATTAA 3390 43.51 MGIHLPSLLLNAKQIFRTQSVSTRCHSNPLPTLQAPVAASNASRHRLALPPFDRGPSKRIRKVAGNFTLHLSLQSVPSQPRVANLHPAIATAAIRRIPRSPAVASSLPLSPDSLVLVCFTHTAMSLRNHVDEIDIEHPADKEDGVVDEDMEVLQRAYRLVGVNPEDYINQRLSSPAAGDADHGSDSDDVDDFELLRDIQNRFSILADEQPQSTLPPVSADEEEDEFEMLRSIQRRFAAYESDTLRNKPNQSRDYVGSLKMDSDDISVESQTSSKRPSVLAFEKGSLPKAALAFVDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRCKILKDFQGSCKRRTSCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSGMYYGPDENSHVACYRMALAKFPPVDRKKWSIVERENLGKGIRQQFQEMVLQISVDQISGPQGVYGDSDDLDNILSSIKDLDTPPERIREFLPKVNWDKLASMYLQGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEMAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRTAVAIFGVRDWQAVASTLEGRAGTQCSNRWKKSLDPARTRKGYFTPDEDVRLKIAVLLFGPRNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPDEVPLLQEARKIQKAALISNFVDRETERPALGPADFRPRPNTDSLCNTDGPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNSQRFQTDGTAQVGIAYNTSSVPEEVQSSKPQRKRNRRGAYTAKRIGVPELRSDSEWCAKQNLDTESLGLQLNSKESERSNSDCTKTVDENIMEVLENKVAEKLTEKNACFSEPEKNQNSTGSSGVSVLSEMTNDLVDYNPSILTDTTLLASTTVDDIEELKGKSAADRDLDDSNSFSLPHSCLELRTVDSEGVDSYSVDEYIAKSNGFCNPTQGKRKKNSKTSNNSHDNLFIPCQQIEQETLGTKKPHHHNQSKKRKHNNTGPSTLKTLEAVEEVDDCTLVGFLQKRLKRTAMTHNETVDCSSNTPVKVDNDDNEPTIASFLNKLKRKKHQRPSGGELN* 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18822670 18842494 - Chy6G121590.1 Chy06g01631 229340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01631 1129 CDD SANT 557 601 IPR001005 -
Chy06g01631 1129 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 607 654 IPR017930 -
Chy06g01631 1129 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 140 1075 - -
Chy06g01631 1129 Gene3D - 554 604 - -
Chy06g01631 1129 Gene3D - 499 550 - -
Chy06g01631 1129 Gene3D - 662 707 - -
Chy06g01631 1129 ProSiteProfiles Myb-like domain profile. 550 601 IPR001005 -
Chy06g01631 1129 SUPERFAMILY Homeodomain-like 605 701 IPR009057 -
Chy06g01631 1129 CDD SANT 662 705 IPR001005 -
Chy06g01631 1129 MobiDBLite consensus disorder prediction 769 792 - -
Chy06g01631 1129 MobiDBLite consensus disorder prediction 793 816 - -
Chy06g01631 1129 ProSiteProfiles Myb-like domain profile. 655 705 IPR001005 -
Chy06g01631 1129 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 550 605 IPR017930 -
Chy06g01631 1129 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 655 709 IPR017930 -
Chy06g01631 1129 Gene3D - 605 660 - -
Chy06g01631 1129 ProSiteProfiles Myb-like domain profile. 497 549 IPR001005 -
Chy06g01631 1129 Pfam Myb-like DNA-binding domain 555 599 IPR001005 -
Chy06g01631 1129 Pfam Myb-like DNA-binding domain 608 654 IPR001005 -
Chy06g01631 1129 Pfam Myb-like DNA-binding domain 661 704 IPR001005 -
Chy06g01631 1129 Pfam Myb-like DNA-binding domain 502 547 IPR001005 -
Chy06g01631 1129 MobiDBLite consensus disorder prediction 734 830 - -
Chy06g01631 1129 SUPERFAMILY Homeodomain-like 534 604 IPR009057 -
Chy06g01631 1129 MobiDBLite consensus disorder prediction 998 1019 - -
Chy06g01631 1129 ProSiteProfiles Myb-like domain profile. 603 654 IPR001005 -
Chy06g01631 1129 MobiDBLite consensus disorder prediction 1033 1055 - -
Chy06g01631 1129 SUPERFAMILY Homeodomain-like 478 546 IPR009057 -
Chy06g01631 1129 SMART sant 401 498 IPR001005 -
Chy06g01631 1129 SMART sant 501 551 IPR001005 -
Chy06g01631 1129 SMART sant 659 707 IPR001005 -
Chy06g01631 1129 SMART sant 607 656 IPR001005 -
Chy06g01631 1129 SMART sant 554 603 IPR001005 -
Chy06g01631 1129 CDD SANT 611 652 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01631 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1887.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01631 Chy-Chr6:18822670 Chy04g02148 Chy-Chr4:26662190 1.09E-13 dispersed
Chy06g01631 Chy-Chr6:18822670 Chy03g01233 Chy-Chr3:15434528 4.25E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g01770 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.2 0.0e+00 1204.1
Chy06g01631 . 285 737 MYB-Related Transcription Factor Family AT3G18100 57.5 1.1e-149 527.3
Chy06g01631 . 285 737 MYB-Related Transcription Factor Family AT3G18100 57.5 1.1e-149 527.3
Chy02g01770 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.2 0.0e+00 1204.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18198 PF00249 Myb_DNA-binding 3.80E-08 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01631 Chy_Chr06 FPKM 15.879391 17.622503 15.706822 17.989151 11.348787 10.780661 13.192511 16.818844 15.432893 17.354792