Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01639 ATGTCTACAGCAAAGCTTCTTCGCCATATCTCTGACCCCATCGATGAAAATCATGACAACAACCGTGAAATCGACCCCTCCGACAGGCTTGTCGGATCGCCCTTAACCGAAGATAGAGATTCTGTTTCCCTTACTCTTGGCGAGCCACTCTTGCGTACTAGTACTGCCAGGATCAGTACTACCTCCCAGCTTGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCCTCGACTACGAGATTATTGAGAATGAACTTTTCAAGCAGGATTGGAGGTCCAGAAAAAAAATGGAGATATTTCAGTATATCATCCTCAAATGGGCGTTGTGCCTTTGCATTGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTCACAAACTACGCTTAACAAATAATCTCATGCTCAAGGAAAAATACTTTCAGGCATTTGTAGTATACGTTGGTTCCAATAGTGCGTTAGCTGTTGCTGCTGCAATCCTCTGTGCCTATATTGCCCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAACGGTATAGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCCATATTTGCTGTTGCCGGGGGATTTGTTGTGGGTAAGGAAGGGCCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATATCGCTTGACTTGGAAGTGGCTCAGATACTTTAAAAATGATAGGGACAGGCGGGATTTGATCACTTGTGGTGCAGCAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACGACTGCTGTAGTAGCTGTTGTCTTAAGGAGTTTCATGGAATTTTGCCGAGGGGGACAGTGTGGGTTATTTGGCGAAGGGGGTCTCATCATGTTCAAAATCAATACTGAAAACTCCACTTATGGTACCCCAGATCTTATTGCGATTGTTTTACTTGGAGTTATTGGCGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTTCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGTACGAAACTTATCCTTGTTGTTGCCGTTTCCATATTGACAACTTGTGTCTCATTTGGTCTTCCTTGGCTATCACAATGTTTACCGTGCCCAACTGACTTGGATGATCAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGTCATTATAATGATCTTGCTTCTTTATTTTTTAATACCAATGATGATGCCATCCGAAACCTGTTCACATCTGCTAATGACAAGCATTTTCAGCTCTCCTCACTTTTTGTCTTCTTTGTTTCTATCTATTGTCTTGGCATTATCACTTATGGCATTGCTGTGCCTTCTGGGCTCTTCATTCCTGTAATTCTGGCTGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTTCTTGAGCTTACTAATAACCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTAATTTCAAAGTCGGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTACCTTTTATGGAAGCCCACGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACGTTTTCTGGGATCGAAAAGGTCGATAACATTGTCCATGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTACTTGTTTTGCTTAGAGAAAAAAAATTTACCAAGAAAAAGGTGTCACTTAGATCAGAAATTTGGAGGGGCTTCAAAGCACATGATTTTGCAAAACCAGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGACTTCAACGAGGAGGAGCTGGAAATGTTTGTTGATCTTCATCCCATTACAAACACGTCACCATACACAGTGGTAGAATCAATGTCACTAGCTAAAGCGGCAATTCTCTTTCATGCACTGGGCTTGAGGCACTTGTTGGTGGTTCCGAAGACACCCGGGAGGCCTCCTATTGCTGGAATTCTTACACGACACGACTTCATGCCGGAGCATATTCTGGGACTTTACCCGCATCTCAACCCCCACAAGTAG 2370 44.22 MSTAKLLRHISDPIDENHDNNREIDPSDRLVGSPLTEDRDSVSLTLGEPLLRTSTARISTTSQLAIVGSNICPIESLDYEIIENELFKQDWRSRKKMEIFQYIILKWALCLCIGLITGLVGFFNNIAVENIAGHKLRLTNNLMLKEKYFQAFVVYVGSNSALAVAAAILCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFMEFCRGGQCGLFGEGGLIMFKINTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGTKLILVVAVSILTTCVSFGLPWLSQCLPCPTDLDDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSANDKHFQLSSLFVFFVSIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIVHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLREKKFTKKKVSLRSEIWRGFKAHDFAKPGSGKGVKLEDLDFNEEELEMFVDLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHILGLYPHLNPHK* 790
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 19009807 19017053 - Chy6G121670.1 Chy06g01639 229348
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01639 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 45 789 - -
Chy06g01639 789 CDD ClC_6_like 75 596 - -
Chy06g01639 789 SUPERFAMILY Clc chloride channel 84 598 IPR014743 -
Chy06g01639 789 Pfam CBS domain 725 773 IPR000644 -
Chy06g01639 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 45 789 - -
Chy06g01639 789 Gene3D Clc chloride channel 98 597 - -
Chy06g01639 789 MobiDBLite consensus disorder prediction 12 36 - -
Chy06g01639 789 Gene3D - 621 760 IPR046342 -
Chy06g01639 789 MobiDBLite consensus disorder prediction 12 26 - -
Chy06g01639 789 Pfam Voltage gated chloride channel 163 577 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy06g01639 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 776 - -
Chy06g01639 789 SUPERFAMILY CBS-domain pair 600 774 IPR046342 -
Chy06g01639 789 PRINTS Plant CLC chloride channel signature 291 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy06g01639 789 PRINTS Plant CLC chloride channel signature 323 330 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy06g01639 789 PRINTS Plant CLC chloride channel signature 305 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy06g01639 789 PRINTS Plant CLC chloride channel signature 80 88 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy06g01639 789 PRINTS Plant CLC chloride channel signature 447 463 IPR002251 GO:0005247|GO:0006821|GO:0016020
Chy06g01639 789 PRINTS Chloride channel signature 545 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy06g01639 789 PRINTS Chloride channel signature 206 225 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy06g01639 789 PRINTS Chloride channel signature 175 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy06g01639 789 PRINTS Chloride channel signature 495 515 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy06g01639 789 PRINTS Chloride channel signature 270 289 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy06g01639 789 PRINTS Chloride channel signature 583 597 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Chy06g01639 789 PRINTS Chloride channel signature 527 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00112 Chy-Chr3:1070444 Chy06g01639 Chy-Chr6:19009807 0 dispersed
Chy05g00231 Chy-Chr5:1925832 Chy06g01639 Chy-Chr6:19009807 0 dispersed
Chy05g01281 Chy-Chr5:17083492 Chy06g01639 Chy-Chr6:19009807 0 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01639 K05016 - csv:101209987 1445.64