Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy06g01639 | ATGTCTACAGCAAAGCTTCTTCGCCATATCTCTGACCCCATCGATGAAAATCATGACAACAACCGTGAAATCGACCCCTCCGACAGGCTTGTCGGATCGCCCTTAACCGAAGATAGAGATTCTGTTTCCCTTACTCTTGGCGAGCCACTCTTGCGTACTAGTACTGCCAGGATCAGTACTACCTCCCAGCTTGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCCTCGACTACGAGATTATTGAGAATGAACTTTTCAAGCAGGATTGGAGGTCCAGAAAAAAAATGGAGATATTTCAGTATATCATCCTCAAATGGGCGTTGTGCCTTTGCATTGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTCACAAACTACGCTTAACAAATAATCTCATGCTCAAGGAAAAATACTTTCAGGCATTTGTAGTATACGTTGGTTCCAATAGTGCGTTAGCTGTTGCTGCTGCAATCCTCTGTGCCTATATTGCCCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAACGGTATAGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCCATATTTGCTGTTGCCGGGGGATTTGTTGTGGGTAAGGAAGGGCCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATATCGCTTGACTTGGAAGTGGCTCAGATACTTTAAAAATGATAGGGACAGGCGGGATTTGATCACTTGTGGTGCAGCAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACGACTGCTGTAGTAGCTGTTGTCTTAAGGAGTTTCATGGAATTTTGCCGAGGGGGACAGTGTGGGTTATTTGGCGAAGGGGGTCTCATCATGTTCAAAATCAATACTGAAAACTCCACTTATGGTACCCCAGATCTTATTGCGATTGTTTTACTTGGAGTTATTGGCGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTTCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGTACGAAACTTATCCTTGTTGTTGCCGTTTCCATATTGACAACTTGTGTCTCATTTGGTCTTCCTTGGCTATCACAATGTTTACCGTGCCCAACTGACTTGGATGATCAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGCCCACCTGGTCATTATAATGATCTTGCTTCTTTATTTTTTAATACCAATGATGATGCCATCCGAAACCTGTTCACATCTGCTAATGACAAGCATTTTCAGCTCTCCTCACTTTTTGTCTTCTTTGTTTCTATCTATTGTCTTGGCATTATCACTTATGGCATTGCTGTGCCTTCTGGGCTCTTCATTCCTGTAATTCTGGCTGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTTCTTGAGCTTACTAATAACCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTAATTTCAAAGTCGGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTACCTTTTATGGAAGCCCACGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACGTTTTCTGGGATCGAAAAGGTCGATAACATTGTCCATGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTACTTGTTTTGCTTAGAGAAAAAAAATTTACCAAGAAAAAGGTGTCACTTAGATCAGAAATTTGGAGGGGCTTCAAAGCACATGATTTTGCAAAACCAGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGACTTCAACGAGGAGGAGCTGGAAATGTTTGTTGATCTTCATCCCATTACAAACACGTCACCATACACAGTGGTAGAATCAATGTCACTAGCTAAAGCGGCAATTCTCTTTCATGCACTGGGCTTGAGGCACTTGTTGGTGGTTCCGAAGACACCCGGGAGGCCTCCTATTGCTGGAATTCTTACACGACACGACTTCATGCCGGAGCATATTCTGGGACTTTACCCGCATCTCAACCCCCACAAGTAG | 2370 | 44.22 | MSTAKLLRHISDPIDENHDNNREIDPSDRLVGSPLTEDRDSVSLTLGEPLLRTSTARISTTSQLAIVGSNICPIESLDYEIIENELFKQDWRSRKKMEIFQYIILKWALCLCIGLITGLVGFFNNIAVENIAGHKLRLTNNLMLKEKYFQAFVVYVGSNSALAVAAAILCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFMEFCRGGQCGLFGEGGLIMFKINTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGTKLILVVAVSILTTCVSFGLPWLSQCLPCPTDLDDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSANDKHFQLSSLFVFFVSIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIVHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLREKKFTKKKVSLRSEIWRGFKAHDFAKPGSGKGVKLEDLDFNEEELEMFVDLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHILGLYPHLNPHK* | 790 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 19009807 | 19017053 | - | Chy6G121670.1 | Chy06g01639 | 229348 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy06g01639 | 789 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 45 | 789 | - | - | |
| Chy06g01639 | 789 | CDD | ClC_6_like | 75 | 596 | - | - | |
| Chy06g01639 | 789 | SUPERFAMILY | Clc chloride channel | 84 | 598 | IPR014743 | - | |
| Chy06g01639 | 789 | Pfam | CBS domain | 725 | 773 | IPR000644 | - | |
| Chy06g01639 | 789 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC-C | 45 | 789 | - | - | |
| Chy06g01639 | 789 | Gene3D | Clc chloride channel | 98 | 597 | - | - | |
| Chy06g01639 | 789 | MobiDBLite | consensus disorder prediction | 12 | 36 | - | - | |
| Chy06g01639 | 789 | Gene3D | - | 621 | 760 | IPR046342 | - | |
| Chy06g01639 | 789 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
| Chy06g01639 | 789 | Pfam | Voltage gated chloride channel | 163 | 577 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Chy06g01639 | 789 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 599 | 776 | - | - | |
| Chy06g01639 | 789 | SUPERFAMILY | CBS-domain pair | 600 | 774 | IPR046342 | - | |
| Chy06g01639 | 789 | PRINTS | Plant CLC chloride channel signature | 291 | 299 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Chy06g01639 | 789 | PRINTS | Plant CLC chloride channel signature | 323 | 330 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Chy06g01639 | 789 | PRINTS | Plant CLC chloride channel signature | 305 | 315 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Chy06g01639 | 789 | PRINTS | Plant CLC chloride channel signature | 80 | 88 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Chy06g01639 | 789 | PRINTS | Plant CLC chloride channel signature | 447 | 463 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Chy06g01639 | 789 | PRINTS | Chloride channel signature | 545 | 564 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Chy06g01639 | 789 | PRINTS | Chloride channel signature | 206 | 225 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Chy06g01639 | 789 | PRINTS | Chloride channel signature | 175 | 192 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Chy06g01639 | 789 | PRINTS | Chloride channel signature | 495 | 515 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Chy06g01639 | 789 | PRINTS | Chloride channel signature | 270 | 289 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Chy06g01639 | 789 | PRINTS | Chloride channel signature | 583 | 597 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Chy06g01639 | 789 | PRINTS | Chloride channel signature | 527 | 543 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g00112 | Chy-Chr3:1070444 | Chy06g01639 | Chy-Chr6:19009807 | 0 | dispersed | |
| Chy05g00231 | Chy-Chr5:1925832 | Chy06g01639 | Chy-Chr6:19009807 | 0 | dispersed | |
| Chy05g01281 | Chy-Chr5:17083492 | Chy06g01639 | Chy-Chr6:19009807 | 0 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy06g01639 | K05016 | - | csv:101209987 | 1445.64 |