Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01688 ATGGGAAACCCATTGGAGAAACTTAAGTTGGTTGATTCAGTCCAACGGCTAGGAGTATGTTATCATTTTGAAGATGAGATTGAACAATTCTTAGAACATATATATGTGTCTTATAACAATTCCCTTTTATTGAGAAACAAAGATAGTGAAGATGATGATCTTCATATTACTGCTCTTCTATTTCGACTTCTCAGGCAACAAGGTTACAAGATCTCATGCGATATATTTTTGAAGTTCATGGACAAGAATGGGAAATTTAAAGAGTCATTGGTTGAGGATGAAAGAGGAATATTGAGCCTATATGAAGCATCACATATGATGGGACATGGAGAAGCTTTGCTTGAGGAAGCTCTTGAATTTACAACCACACATCTTAAAACATATATTCATCTTTGCTCAAATATTAATCCAAATTTTGCATCGGAAGTTAGTAATGCATTGAAATTGCCTATAAGAAAAGATATTCCAAGAAAGAAGGCAAGAGAGTATTTGGAAATTTACCAGCTACATCCTTCTCACAATGAGACTTTGCTTGAATTCTCTAAACTAGACTTCAACATATTACAAAAACTTCATCGAAAGGAGCTAAGTGAAATCTGCAGGTGGTGGAAGGATTTGGATGTCCAAACAAAGTTTCCTTTTGCAAGAGATAGAATTGTGGAGTGTTATTTTTGGACGTTGGGAGCATACTTTGAACCTCAATACAGTGTTGGGAGGAAAATGTTAACCAAAGTAATTGCAATTTCTTCAATTTTAGATGATATTTACGATGCCTATGGAACATTTGAAGAACTCCAAGTCCTCACCCCAGCAATTCAAAGGTGGGATAGAAGCATGGTGCATACACTTCCTGAGTACATGAAACCATTTTATGTAGCAATGTCAGAACTTTATGAGGAAATTAGCAAAGAGATTGGCAAGGATCAAAATTCTCTCCACCTTCAAGTTGCAATCCGAGGATTTGAACAAGAAAGGAAGCATGTAGCTTCTGCTGTTGAATTGTATATGGGGCAATATGATTGTTCGGAAGAAGAAGCCTGTGTTGAACTTCATAAGGAAGTGGTTGATGCATGGAAGGATACAAATGAAGCATTTTATCGTCCATTTAATGTTCCAATGCCTGTTCTAATGCGTGTACTCAATTTTTCAAGAGTTGTGAACTTGCTTTATTTGGATGAAGATGGATACACAAATGCAAAGAATGGAACAAAGTATCTTATTAAATCTCTTCTTGTTGACCCACTGCCTTTTTAA 1254 35.96 MGNPLEKLKLVDSVQRLGVCYHFEDEIEQFLEHIYVSYNNSLLLRNKDSEDDDLHITALLFRLLRQQGYKISCDIFLKFMDKNGKFKESLVEDERGILSLYEASHMMGHGEALLEEALEFTTTHLKTYIHLCSNINPNFASEVSNALKLPIRKDIPRKKAREYLEIYQLHPSHNETLLEFSKLDFNILQKLHRKELSEICRWWKDLDVQTKFPFARDRIVECYFWTLGAYFEPQYSVGRKMLTKVIAISSILDDIYDAYGTFEELQVLTPAIQRWDRSMVHTLPEYMKPFYVAMSELYEEISKEIGKDQNSLHLQVAIRGFEQERKHVASAVELYMGQYDCSEEEACVELHKEVVDAWKDTNEAFYRPFNVPMPVLMRVLNFSRVVNLLYLDEDGYTNAKNGTKYLIKSLLVDPLPF* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19596758 19599742 - Chy6G122160.1 Chy06g01688 229397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01688 417 CDD Terpene_cyclase_plant_C1 3 414 IPR044814 GO:0010333|GO:0016102
Chy06g01688 417 Pfam Terpene synthase family 2, C-terminal metal binding 321 360 - -
Chy06g01688 417 PANTHER OS04G0344100 PROTEIN-RELATED 320 396 - -
Chy06g01688 417 PANTHER OS04G0344100 PROTEIN-RELATED 1 309 - -
Chy06g01688 417 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 3 172 IPR008930 -
Chy06g01688 417 SUPERFAMILY Terpenoid synthases 173 416 IPR008949 -
Chy06g01688 417 PANTHER TERPENE SYNTHASE 2-RELATED 320 396 - -
Chy06g01688 417 PANTHER TERPENE SYNTHASE 2-RELATED 1 309 - -
Chy06g01688 417 Pfam Terpene synthase family, metal binding domain 178 313 IPR005630 GO:0000287|GO:0010333|GO:0016829
Chy06g01688 417 Gene3D - 3 172 IPR036965 GO:0010333|GO:0016829
Chy06g01688 417 Pfam Terpene synthase, N-terminal domain 5 147 IPR001906 GO:0010333|GO:0016829
Chy06g01688 417 Gene3D Farnesyl Diphosphate Synthase 173 317 IPR008949 -
Chy06g01688 417 Gene3D Farnesyl Diphosphate Synthase 321 415 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01688 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - csv:101211452 593.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01688 Chy-Chr6:19596758 Chy06g01753 Chy-Chr6:20432117 0 dispersed
Chy06g01688 Chy-Chr6:19596758 Chy06g01750 Chy-Chr6:20363751 3.32E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00921 . . Bda12g00870 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g01688 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01688 Chy_Chr06 FPKM 9.894382 9.652524 10.3003 9.739122 10.0545 8.491655 9.363962 9.605778 8.392728 8.879685