Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01701 ATGAGTTATATGGGTACTGAAGTTGTTACTGTGATACCCAAAAAGGAAGAACAATTTCCTTGGCTCGAAATCATATATCTCAAGTTTCCTAGCGCCGAATTGGATTCGAGTAAAATTCTCATCTTCCAGGGTGAGTTCTTGGTCCATGGGGATAATTCTTGGTTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGTCTTGGAGGAGCATGTGGTTACGACAACACGTTTCATGCCGGGTTCGGAATAAATACGGCAGCCGTGAGCGGCGTACTTTTCAGAAGGGGAGAGGCCTGCGGCGCTTGTTTTCTAGTAATTTGCAACTATAACGCAGACCCCAAGTGGTGTCTCCGCCGCCGCGCCGTCACCGTCACTGCCACAAACTTCTGCCCGTCCAATAACAACGGGGGCTGGTGCGACCCCCCTCGGTCCCATTTCGACATGTCGTCACCTGCTTTTCTTACTATTGCTCGTGAAGGCAACGAAGGGATTGTCCCTGTCCTTTACAAGAGGGTAAGTTGTAAAAGAAAAGGAGGGGTCCGATTCACATTGAGAGGACAATCAAACTTCAACATGGTGATGATATCAAATGTGGGAGGAAGTGGCGATGTGAAGGCTGCATGGGTAAAAGGTTCGAAGATGAGTATGTGGACGCCCATGCACCGAAATTGGGGAGCAAATTGGCAAGCTAACGTCGACCTTCGAAACCAAAGAATGTCATTTAAACTCACTTTACTCGATGGAAGAACATTGGAGTTTGTCAACGTTGTTCCTTCCTCATGGAGATTCGGACAAACATTTTCGTCCATGGTTCAATTCTCCTAG 837 47.07 MSYMGTEVVTVIPKKEEQFPWLEIIYLKFPSAELDSSKILIFQGEFLVHGDNSWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGVLFRRGEACGACFLVICNYNADPKWCLRRRAVTVTATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIAREGNEGIVPVLYKRVSCKRKGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVKGSKMSMWTPMHRNWGANWQANVDLRNQRMSFKLTLLDGRTLEFVNVVPSSWRFGQTFSSMVQFS* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19672998 19678896 + Chy6G122290.1 Chy06g01701 229410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01701 278 Pfam Expansin C-terminal domain 184 262 IPR007117 -
Chy06g01701 278 Pfam Lytic transglycolase 89 173 IPR009009 -
Chy06g01701 278 PANTHER EXPANSIN-A15 49 278 IPR002963 GO:0009664
Chy06g01701 278 PANTHER EXPANSIN-A12 49 278 - -
Chy06g01701 278 SUPERFAMILY Barwin-like endoglucanases 49 201 IPR036908 -
Chy06g01701 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 273 IPR007117 -
Chy06g01701 278 Gene3D - 45 179 IPR036908 -
Chy06g01701 278 SMART dpbb_1 89 173 IPR007112 -
Chy06g01701 278 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Chy06g01701 278 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Chy06g01701 278 PRINTS Expansin/Lol pI family signature 166 182 IPR007118 GO:0005576
Chy06g01701 278 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Chy06g01701 278 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Chy06g01701 278 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Chy06g01701 278 Gene3D - 183 278 IPR036749 -
Chy06g01701 278 SUPERFAMILY PHL pollen allergen 180 273 IPR036749 -
Chy06g01701 278 PRINTS Expansin signature 182 194 IPR002963 GO:0009664
Chy06g01701 278 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Chy06g01701 278 PRINTS Expansin signature 259 275 IPR002963 GO:0009664
Chy06g01701 278 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Chy06g01701 278 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Chy06g01701 278 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Chy06g01701 278 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Chy06g01701 278 PRINTS Expansin signature 113 124 IPR002963 GO:0009664
Chy06g01701 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 183 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01701 Chy-Chr6:19672998 Chy03g01034 Chy-Chr3:13871209 8.19E-96 dispersed
Chy06g01701 Chy-Chr6:19672998 Chy10g01014 Chy-Chr10:15516342 5.03E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01701 - - csv:101204263 498.434