Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01702 ATGGCCGCTGCGTCGGCAATGTTCAAAATCTTGAGCAGGTCTTCTTCAGGTTGCACGAGAACGCTAAGACCAGAAACAGATGCATTCTGTTTTGTGGCGTTGAGATTATACAGTACGAGACGAAGCTGCAATCGAAGAAACCTCTATGCGAGGATTAGTCCTCTCGGTGACCCTGACCGTACTGTAGTTCCGGTTCTTAATCAATGGATTAAGGAAGGCAGGAACATCAAGGACTTTGAGCTCCGAAGAATCGTTCGTGACCTTCGTACTTGCCGGCGGTATCGCCAAGCCCTTGAGGTGTCTGAATGGATGTGTAGCAAGGGACTTTTTTCCCTCACAACAAGAGACTTTGCCATCCAGCTCGATCTGATTGGCCAAGTTCGGGGGTTGGATTCTGCAGAGAAGTATTTTGGGAGTGTTTCCAACCAAAAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTATAGATAAGTCCCTTGCTCATATGCAGAAGATGAAGGAGATGGGTCTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAACACTGGCCAGGCCGATAAAGTTCCCAATGTACTTTCCGAAATGAAGGAGAATGGTGTTCTTCCTGACAATTTTAGCTATAGAATTTGTATCAGTTCTTATGGAGCTAGGTCTGATGTCATCAGTATGGAAAACGTTTTGAAAGAAATGGAGGGTCAAACTCATATATCCATGGATTGGACTACTTATTCAATGGTTGCCGGTTTTTTCATAAAAGCTGGTATGCATGACAAAGCAATGAATTATCTTCGGAAATGTGAGGACAAGGTTGATCAAGACGCACTTGGCTTCAATCATCTCATTTCACACTACGCCAATCTGGGACATAAGAATGAAGTAATGAGATTGTGGGCTCTTCTGAAGAAGGGTAAGAAGCAACTCAATAGAGATTATATAACCATGTTGGGTTCTTTGGTAAAGCTGGAGTTGCTCGAGGAAGCTGAGAATGTTGTCATGGAATGGGAGTCATCTTGCCAATGTTATGATTTTCGAGTACCGAATGTCGTTCTTATTGGGTATTCGCAAAAGGGTTTAATTGAGAAAGCTGAAAAGATGCTTAGAAACATCATCGTAAATGGGATGATCCCATCACCAAATAGTTGGGGCATTATTGCATCTGGGTACTTGGAAAAGCAGAACCTAGAGAAAGCTTTTGAGTGCATGAAAGAAGCGCTTGCTGTGAAAGGGCAAAATAAAGTTTGGAGGCCCAAACCTAATGTTTTATCAAGCATCCTGAGATGGCTATCTGAAAATAGAAGATATGAAGAGATGAAAGAGTTTATGAGCTCATTGAAGACTGTACCTTCCATGGATGAAAAACTAAATAATGCCTTGGATGAGCTTTTAGAAATCATGGCAAACGACGATGGAATGACAAAGGTCGAATTAGAGGTGAATTGA 1479 42.12 MAAASAMFKILSRSSSGCTRTLRPETDAFCFVALRLYSTRRSCNRRNLYARISPLGDPDRTVVPVLNQWIKEGRNIKDFELRRIVRDLRTCRRYRQALEVSEWMCSKGLFSLTTRDFAIQLDLIGQVRGLDSAEKYFGSVSNQKEIGKLYGALLNCYVREGLIDKSLAHMQKMKEMGLASSPLCYNDIMCLYLNTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGARSDVISMENVLKEMEGQTHISMDWTTYSMVAGFFIKAGMHDKAMNYLRKCEDKVDQDALGFNHLISHYANLGHKNEVMRLWALLKKGKKQLNRDYITMLGSLVKLELLEEAENVVMEWESSCQCYDFRVPNVVLIGYSQKGLIEKAEKMLRNIIVNGMIPSPNSWGIIASGYLEKQNLEKAFECMKEALAVKGQNKVWRPKPNVLSSILRWLSENRRYEEMKEFMSSLKTVPSMDEKLNNALDELLEIMANDDGMTKVELEVN* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19683589 19685512 + Chy6G122300.1 Chy06g01702 229411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01702 492 SUPERFAMILY TPR-like 157 426 IPR011990 GO:0005515
Chy06g01702 492 TIGRFAM PPR: pentatricopeptide repeat domain 184 216 IPR002885 -
Chy06g01702 492 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 33 473 - -
Chy06g01702 492 Pfam PPR repeat 360 386 IPR002885 -
Chy06g01702 492 Pfam PPR repeat 150 178 IPR002885 -
Chy06g01702 492 Pfam PPR repeat family 184 226 IPR002885 -
Chy06g01702 492 PANTHER OS12G0527900 PROTEIN 33 473 - -
Chy06g01702 492 Gene3D Tetratricopeptide repeat domain 265 480 IPR011990 GO:0005515
Chy06g01702 492 Gene3D Tetratricopeptide repeat domain 65 235 IPR011990 GO:0005515
Chy06g01702 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Chy06g01702 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01702 - - - csv:101204020 969.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01702 Chy-Chr6:19683589 Chy12g00940 Chy-Chr12:14747935 4.02E-163 dispersed
Chy01g00203 Chy-Chr1:1394151 Chy06g01702 Chy-Chr6:19683589 1.86E-54 transposed
Chy01g01592 Chy-Chr1:21882878 Chy06g01702 Chy-Chr6:19683589 2.06E-78 transposed
Chy07g01346 Chy-Chr7:18094198 Chy06g01702 Chy-Chr6:19683589 2.53E-77 transposed
Chy10g00879 Chy-Chr10:14588038 Chy06g01702 Chy-Chr6:19683589 2.82E-75 transposed
Chy11g01226 Chy-Chr11:18423726 Chy06g01702 Chy-Chr6:19683589 4.85E-26 transposed
Chy12g00938 Chy-Chr12:14740470 Chy06g01702 Chy-Chr6:19683589 1.47E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002224 2 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01702 Chy_Chr06 FPKM 4.744444 8.007694 2.9303 5.726836 3.212216 0.0 5.167076 0.0 0.0 0.0