Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01706 ATGGAAGTGAGTTCAAAATATTTTTTAACTGATGTGCCAAGTGAGGTTTATCGAAGCTTGGATGCAGTTCAGGCGGACGAGAAGTGGTGGGAGGCTGTGGAGCTACAGAAGCTAATTTTAGCTCATAATAATATTCAATTGTTGAGTGAAGAACTGAGGAATTTGTCTTCTCTTGCTGTATTAAATGTTAGTCACAACAAACTTTCTGAACTTCCAGCTGCAATTGGAGAGCTTCCTGCCCTAAAGCTCTTAGATGTGTCCTTCAATTCATTAATGAGAATACCTGATGAAATTGGATCCGCCACTTCACTTGTCAAATTTGACTGTTCAAGCAATCACCTTCAGGAACTACCAGGTGGACTTGGAAGGTGTTCAGATCTGTCAGATCTAAAGGCATCAAACAACTCCATTTCCAGCTTGCCTGTTGAACTTGCAAACTGCTCAAAATTGACGAAGCTTGATATGGAGGGGAACAAGCTAAAGGTGATATCCAAAAATTTGATTGCATCATGGACTGTGCTCACTGAACTTAATGCGTCAAAGAATTTGCTTAATGAGTTACCTGAGAATATTGGTAGCCTATCACCCCTCATTCGTTTAAATGTATTCCAAAACAAAATTTCATCAATTCCACCTTCAATAAAGGATTGTTGTGCGCTTGCAGAGTTATATATGGGGAATAATTCAGTGAGTACGCTACCAGTGGAGATTGGGGCACTTTCTCATTTAGGGACTTTAGATCTTCACTCAAACCAGTTGAAAGAGTATCCAGTTGAGGCATGCAAGTTAAATCTCTTGGTCCTAGACCTTTCAAACAATTCATTGAGTGGACTGCCCCCAGAAATAGGTAAGATGACTACTTTGAGAAAGCTCTTGCTCACAGGCAATCCCATACGTACCCTTCGAAGCTCACTAGTTTCTGGGCCAACACCTGCTTTACTGAGGTTTCTTCGAAGTAGACTTCCTGAAAATGAAGGGCCTGAGGCTAGTAGCACTCAGAGAGGGGATGTAATAACTATGGCAGCGAGAATGTCTATCACTTCAAAGGAGCTTTCTCTAGAAGGGCAAGGGCTGAGTGCTGTGCCATCAGAAGTTTGGGAATCCAGTGAACTCATGAAACTTGATCTGTCAAAGAATTCCCTCCAGGAGCTACCAGTTGAACTTTCTTCATGCACTTCACTACAGACCTTGATTTTGTCTAGGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGACGCTACCTAATCTCACGTGTTTAAAGCTGGACAATAATCCACTTAAACAGATTCCGTCAGATGGGTTTCAGGCAGTCTCCATGCTACAGGTTCTAGATCTTAGTGGTAATATAGCTTGCTTACCTGAGCACCCAACATTTTCCGGCTTACCACTTCTGCAAGAGCTTTACCTAAGGAGAATGCGGCTACATGAAGTTCCATCATCTATATTGGGCTTAAAGCACATGCGGATACTAGATTTGAGTCAAAATTCAATTCAATTAGTGCCAGAGGAATTGAAGAATCTTGCTGCCCTTACTGAGCTGGACCTATCAGATAATAACATTTCAATGCTCTCTCCCCAGCTGGTAAGAATGGATTTGGATAGTATTTTGTAG 1617 41.68 MEVSSKYFLTDVPSEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLLSEELRNLSSLAVLNVSHNKLSELPAAIGELPALKLLDVSFNSLMRIPDEIGSATSLVKFDCSSNHLQELPGGLGRCSDLSDLKASNNSISSLPVELANCSKLTKLDMEGNKLKVISKNLIASWTVLTELNASKNLLNELPENIGSLSPLIRLNVFQNKISSIPPSIKDCCALAELYMGNNSVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACKLNLLVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPIRTLRSSLVSGPTPALLRFLRSRLPENEGPEASSTQRGDVITMAARMSITSKELSLEGQGLSAVPSEVWESSELMKLDLSKNSLQELPVELSSCTSLQTLILSRNKIKDWPGAILKTLPNLTCLKLDNNPLKQIPSDGFQAVSMLQVLDLSGNIACLPEHPTFSGLPLLQELYLRRMRLHEVPSSILGLKHMRILDLSQNSIQLVPEELKNLAALTELDLSDNNISMLSPQLVRMDLDSIL* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19710558 19723153 + Chy6G122340.1 Chy06g01706 229415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01706 538 Gene3D Ribonuclease Inhibitor 343 454 IPR032675 -
Chy06g01706 538 PANTHER - 349 532 - -
Chy06g01706 538 PANTHER - 9 147 - -
Chy06g01706 538 SUPERFAMILY L domain-like 349 529 - -
Chy06g01706 538 Gene3D Ribonuclease Inhibitor 166 325 IPR032675 -
Chy06g01706 538 PRINTS Leucine-rich repeat signature 265 278 - -
Chy06g01706 538 PRINTS Leucine-rich repeat signature 509 522 - -
Chy06g01706 538 Gene3D Ribonuclease Inhibitor 455 536 IPR032675 -
Chy06g01706 538 PANTHER S-CELL ENRICHED WITH LEUCINE-RICH REPEAT-CONTAINING PROTEIN SLRA-RELATED 349 532 - -
Chy06g01706 538 PANTHER S-CELL ENRICHED WITH LEUCINE-RICH REPEAT-CONTAINING PROTEIN SLRA-RELATED 9 147 - -
Chy06g01706 538 SMART LRR_bac_2 78 97 - -
Chy06g01706 538 SMART LRR_bac_2 509 529 - -
Chy06g01706 538 SMART LRR_bac_2 124 143 - -
Chy06g01706 538 SMART LRR_bac_2 368 387 - -
Chy06g01706 538 SMART LRR_bac_2 55 74 - -
Chy06g01706 538 SMART LRR_bac_2 147 166 - -
Chy06g01706 538 SMART LRR_bac_2 415 434 - -
Chy06g01706 538 SMART LRR_bac_2 174 190 - -
Chy06g01706 538 ProSiteProfiles Leucine-rich repeat profile. 417 438 IPR001611 GO:0005515
Chy06g01706 538 PANTHER S-CELL ENRICHED WITH LEUCINE-RICH REPEAT-CONTAINING PROTEIN SLRA-RELATED 89 257 - -
Chy06g01706 538 ProSiteProfiles Leucine-rich repeat profile. 393 414 IPR001611 GO:0005515
Chy06g01706 538 Pfam Leucine rich repeat 465 522 IPR001611 GO:0005515
Chy06g01706 538 Pfam Leucine rich repeat 34 91 IPR001611 GO:0005515
Chy06g01706 538 Pfam Leucine rich repeat 349 404 IPR001611 GO:0005515
Chy06g01706 538 Pfam Leucine rich repeat 242 298 IPR001611 GO:0005515
Chy06g01706 538 Gene3D Ribonuclease Inhibitor 16 165 IPR032675 -
Chy06g01706 538 PANTHER - 89 257 - -
Chy06g01706 538 PANTHER - 127 307 - -
Chy06g01706 538 SUPERFAMILY L domain-like 33 305 - -
Chy06g01706 538 SMART LRR_typ_2 264 284 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 55 76 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 240 263 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 463 485 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 415 438 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 102 124 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 171 194 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 33 54 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 392 414 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 78 101 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 509 532 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 285 308 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 486 508 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 147 170 IPR003591 -
Chy06g01706 538 SMART LRR_typ_2 369 391 IPR003591 -
Chy06g01706 538 Pfam Leucine Rich Repeat 417 438 IPR001611 GO:0005515
Chy06g01706 538 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515
Chy06g01706 538 PANTHER S-CELL ENRICHED WITH LEUCINE-RICH REPEAT-CONTAINING PROTEIN SLRA-RELATED 127 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01706 - - - csv:101203285 969.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01706 Chy-Chr6:19710558 Chy06g00397 Chy-Chr6:2692675 1.97E-09 dispersed
Chy06g01706 Chy-Chr6:19710558 Chy02g00498 Chy-Chr2:3043827 8.55E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01706 Chy_Chr06 FPKM 7.17176 6.136065 6.022483 5.519845 7.669448 6.043255 7.234776 6.433074 7.294468 7.035329