Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01715 ATGGCTTCGGTGCACGCCACGCCTCCTCAGACCTTCACTTCCTTCACCACAGCAAAGCGAGCTCCGGCGCCCTCTCATCCGCGCGCCTCCATCAATTTCCACGCGCCGAAGCTTCCAGAGCGTTCTATTTTCTCCAGAATTGGGCGGAACTCCAATTGGGTCTTGAACTCGGCTGTGGAAGAGTTCGATGTTATCCCGGTGCAGAGTTCTGATTTTACCGACCAACAGGAAGGGGTGGCGCTGGGTCGGACGGAGAGGGATGGCGCGGAGGGAGAGCTGGGGAGTGCCAGTGTGGTAGGTGGATTCGGCGAGCTCTCGTTGGGAGGCGCTGGTGAAATTCAGGGGTTTTCTTCTTCTGCTTCTGTTGGCGATGGCGGCGGAACAGAGAGAGGGGAAATGGAGAGGGTTATGATTGATCGGATTATCAATGCCACCATTGTTCTTGCGGCGGGTTCTTATGCTCTCACCAAGTTGCTTACCATCGACCAAGATTATTGGCATGGATGGACACTTTATGAAATACTGAGATATGCCCCTCAACACAACTGGAGTGCTTATGAGGAAGCTCTTAAGACGCACCCTGTCCTTGCTAAAATGGTGATTAGTGGAGTGGTGTACTCTCTTGGAGATTGGATTGCGCAGTGTTTTGAAGGAAAGCCTCTGTTTGAATTTGATCGCACACGCATGTTTAGATCAGGCCTCGTTGGCTTTTCTTTACATGGTTCCCTTTCCCACTACTACTATCATTTTTGTGAGGGTCTTTTTCCTTTTCAAGATTGGTGGGTAGTTCCTGCAAAAGTAGCCTTCGATCAAACGGCATGGTCGGCAGTTTGGAACAGTATTTATTTCGTGGTATTAGGTTTCCTGCGGCTTGAGTCCCCAGTTTCTATATTTAATGAACTGAAGGCGACATTTTGGCCTATGCTTACTGCGGGTTGGAAACTTTGGCCATTTGCTCATCTTATCACATACGGTGTTATTCCTGTAGAACAAAGACTCCTGTGGGTTGATTGTGTGGAGCTTATCTGGGTGACCATACTCTCAACGTACTCAAACGAAAAATCGGAGGCCAGAATCTCTGAGGTAGCAACAGATTCGAGTTCAGATTCTCTTACCACAGATTCAACTCAGGTATTTTGGTCTTATAACCCTTGA 1155 48.83 MASVHATPPQTFTSFTTAKRAPAPSHPRASINFHAPKLPERSIFSRIGRNSNWVLNSAVEEFDVIPVQSSDFTDQQEGVALGRTERDGAEGELGSASVVGGFGELSLGGAGEIQGFSSSASVGDGGGTERGEMERVMIDRIINATIVLAAGSYALTKLLTIDQDYWHGWTLYEILRYAPQHNWSAYEEALKTHPVLAKMVISGVVYSLGDWIAQCFEGKPLFEFDRTRMFRSGLVGFSLHGSLSHYYYHFCEGLFPFQDWWVVPAKVAFDQTAWSAVWNSIYFVVLGFLRLESPVSIFNELKATFWPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSNEKSEARISEVATDSSSDSLTTDSTQVFWSYNP* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19999515 20002411 - Chy6G122430.1 Chy06g01715 229424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01715 384 PANTHER PEROXISOMAL MEMBRANE 22 KDA FAMILY PROTEIN 40 370 - -
Chy06g01715 384 MobiDBLite consensus disorder prediction 1 20 - -
Chy06g01715 384 Pfam Mpv17 / PMP22 family 287 348 IPR007248 GO:0016021
Chy06g01715 384 PANTHER PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 40 370 IPR007248 GO:0016021
Chy06g01715 384 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01715 K13348 MPV17; protein Mpv17 - csv:101205134 729.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00361 Chy-Chr1:2606387 Chy06g01715 Chy-Chr6:19999515 5.21E-143 dispersed
Chy04g01687 Chy-Chr4:23263166 Chy06g01715 Chy-Chr6:19999515 2.74E-13 dispersed
Chy05g01370 Chy-Chr5:17804176 Chy06g01715 Chy-Chr6:19999515 4.33E-07 dispersed
Chy06g01715 Chy-Chr6:19999515 Chy07g01707 Chy-Chr7:20862031 2.36E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g273 Blo03g00638 . Bda07g00282 . . . . . Cmo16g00855 . . . . . . . . . . . . . . . Cla10g00622 Cam10g0615 Cec10g0644 Cco10g0619 Clacu10g0645 Cmu10g1466 Cre10g0857 Cone6ag0123 Cone9ag0147 Cone14ag1080 . . Csa03g00608 . . . . . . Bpe11g00495 . . . . . . . . . . Cpe14g00692 . . . . . . . . . . . . . . . Lsi05g00700 . Chy06g01715 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002496 3 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 2 2 2 2 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01715 Chy_Chr06 FPKM 6.017372 2.015395 9.763824 11.351826 19.931753 19.32023 17.564075 12.862218 11.4534 13.036351