Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01730 ATGGCCACCACCTCCCTAACATCCGATGACGAAGACCTAGACCACGAAGAATCAGAAGAAGAAGAAGAAGAACACTCCAACGCTGCCTTTTGTCAGAGCTTATACGGAGTTGGTTCAGTTCTCGACCCAACATCCAAATGGGTTCGAGAATGGAATTGGGTCTTCCTCCTCGTCTGTGCAGCGGGGCTGTTCGTCGACCCTTTGTTTCTCTACACCCTATCCATAAGCGAGTCGTGGATGTGCGTCTTTATTGACGGGTGGTTGGCCATCACCGTCACGGTCCTCCGCTGCATGGGCGATGCTTTGCACCTTTGGAATATGTGGCTTCAGCTCAAGACTGGTACAAAGTCATCCTTCGCTGGTAGCGGGGAGGGTGATGGGAGGGGTGAAAATAGAGGGCTTACAGATAGTAGCCCACGCGCCGTCGCTCTCCGGTATTTGAAGTCCAAGAAAGGCTTCTTTTTTGATCTCTTTGTCATTCTTCCTTTTCCTCAGGTTGTATTATGGGTAGTAATTCCTAGAATAATGAAAGAAGGATTAGTGACATCGGTGATGACAGTATTATTGATAGTATTTTTGTTTCAATATTTACCAAAATTGTACCATTCTGTTTGCTTACTACGACGTCTCCAAAACCTTTCTGGTTACATCTTTGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTTGTTGCTGCCCATGCTGCAGGTGCATGTTGGTATCTATTAGGGGTACAAAGAGCAGCAAAATGTCTAAAAGAGCAATGTAGATCAGCAACAAGCAACAGCTGTGGGCTGAGGTTGTTATCATGCAAAGACCCAATCTTCTATGGACCAAACAATATGAGAATGGGAAGAGATGGAGGAAGATTTGATTGGGCAAACAATAGGCTATCAAAATTCATGTGTTTAGATACTGCTGATAACTTTGATTATGGAGCTTATAAATGGACTGTTCAACTTGTTGTCAATCAAAGTCGGTTGGAGAAAATCCTTTTCCCCATCTTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAATTTGGAAAGCACAACTGAATGGCTGGAAGTAGTGTTCAATATCATTGTTCTCACCAGTGGACTCTTATTGGTCACCATGTTGATTGGAAATATCAAGGTGTTTCTACATGCAACAACGTCAAAAAAACAAGGAATGCAGCTGAAGATGAGGAACCTAGAGTGGTGGATGAGGAAGCGACGGCTGCCACAAGGGTTTCGGCAGCGTGTTCGGAACTATGAGCGCCAACGGTGGGCGGCGATGCGGGGTGTGGACGAGTGCGAGATGATAAAAAACCTACCGGAAGGGCTTCGACGAGACATAAAGTATCACCTTTGCTTGGATCTAGTTAGGCAGGTGCCATTGTTTCAACATATGGATGATCTTGTTCTTGAGAACATTTGTGATCGTGTCAAGTCCGTCATCTTCACTAAGGGCGAAACCATAACAAGAGAAGGAGATCCAGTACAAAGAATGCTATTCGTAGTGCGAGGGCATCTCCAAAGCAGCCAAGTCTTACGCGATGGCGTAAAAAGCTGCTGCATGTTGGGCCCCGGCAACTTCAGCGGCGACGAGCTTCTATCCTGGTGCCTCCGCCGCCCTTTCATAGAGCGCCTTCCACCCTCCTCCTTTACTCTCGTGACACTGGAGACCACTGAAGCCTTCAGCTTGGAGGCCGAGGATGTCAAGTATGTAACCCAGCACTTCCGCTACACCTTTGTCAATGACAAGGTCAAGCGCAGTGCCCGCTACTACTCCCCCGGCTGGCGCACTTGGGCTGCTGTTGCCATCCAGCTAGCCTGGCGCCGATATCGCCATCGTCTCACACTCACGTCCTTGTCCTTTATTCGGCCCCGCCGCCCACTCTCACGGTGCTCTTCCTTGGGGGAGGATCGCCTCCGCCTCTATACGGCGTTGCTTACTTCTCCAAAGCCCAACCACGACCACTTTGATTTTTGA 1986 48.24 MATTSLTSDDEDLDHEESEEEEEEHSNAAFCQSLYGVGSVLDPTSKWVREWNWVFLLVCAAGLFVDPLFLYTLSISESWMCVFIDGWLAITVTVLRCMGDALHLWNMWLQLKTGTKSSFAGSGEGDGRGENRGLTDSSPRAVALRYLKSKKGFFFDLFVILPFPQVVLWVVIPRIMKEGLVTSVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCRSATSNSCGLRLLSCKDPIFYGPNNMRMGRDGGRFDWANNRLSKFMCLDTADNFDYGAYKWTVQLVVNQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQGMQLKMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSVIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSFTLVTLETTEAFSLEAEDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNHDHFDF* 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20155535 20160798 + Chy6G122580.1 Chy06g01730 229439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01730 661 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 10 657 - -
Chy06g01730 661 ProSiteProfiles cAMP/cGMP binding motif profile. 464 543 IPR000595 -
Chy06g01730 661 SUPERFAMILY Voltage-gated potassium channels 42 385 - -
Chy06g01730 661 Pfam Ion transport protein 51 381 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy06g01730 661 SUPERFAMILY cAMP-binding domain-like 390 578 IPR018490 -
Chy06g01730 661 Gene3D Helix hairpin bin 389 455 - -
Chy06g01730 661 Gene3D - 52 386 - -
Chy06g01730 661 Pfam Cyclic nucleotide-binding domain 484 572 IPR000595 -
Chy06g01730 661 MobiDBLite consensus disorder prediction 1 26 - -
Chy06g01730 661 SMART cnmp_10 464 593 IPR000595 -
Chy06g01730 661 Gene3D Jelly Rolls 462 580 IPR014710 -
Chy06g01730 661 CDD CAP_ED 464 570 IPR000595 -
Chy06g01730 661 MobiDBLite consensus disorder prediction 10 24 - -
Chy06g01730 661 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 10 657 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01730 Chy-Chr6:20155535 Chy09g00212 Chy-Chr9:1790434 0 dispersed
Chy06g01730 Chy-Chr6:20155535 Chy06g00103 Chy-Chr6:680407 4.17E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01730 K05391 - csv:101207531 1302.73