Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01737 ATGGACAAAGTTATTATGTATCAAACATATGATCAATGTAAAATAATATTCATCCATCTTGCACGGGATAAAGAAGAAGATGGTGGACGATGGCGAGGAGAGTTGAAAGAAAATGGGAGGGAATTCAGATTTGGAAACCACAAACTCATGGACTTGCACGTGACAAACCATGCAATTGCACGATTTGACAGGCTTACGTCTGCAGCAATCTCCGATTCCTTAACGGCTCAAAACCCATATCTCAGAGATGGCCTTAGTCTGGTCTCTAGTAATGGAACTTTTGAATTGGGTTTCTTTAGTCCTGGACTTCCCAGTAACCGTTACTTGGGAATTTGGTACAAGAATCGCCGAGGTCCAACATCTGTTTGGGTTGCTAATAGGAAAACCCCCATTAGTGGTTCGTCTGGTGTACTGGTGATGAACATTACAACAGGAAATCTTACACTCTTCAGCCATAATTCCACTGTTGTTGTTTGGTCCGCCAGGTTACTGAGAAAAGTCCCCAATGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGGATGATGAAAATCCCCAAAACTATTCCTGGCAAAGCTTTGATTACCCTTCTGATACTCTCTTGCCTGGAATGAAGCTAGGTTGGGACTTGAGATATAACATAGAAAGAAGATTAGAGGCTTGGAACAATCTCAATGACCCATCACCTGGAGACCTCAGTTGGAGGATGGAGCTTCATGAATATCCCGAGACTGTCATGTGGAAAGGTTCCCGGAAGTACGTTAGGCATGGCCCATGGAATGGTGTGAGACTCAGTAGTAGACCACTAGCTGCAGCGCCAATTTTGAACTTCAATTTTGTTTCAAATGAGAATGAGGTTTACTACCAAATCTCTGTTGTAAATAAGTCTCATTCAGTGATGTTGGTGATGAACCAATCGACTTACACGCGCATTTTATATTTGTGGTCTGCAGCTGAAAGACGGTGGAGAGTTTACACTTCATTGCCAAGAGATTACTGTGATAATTATGCCCTGTGTGGCCCATATGGTTATTGTGATATAAGGGTAACTCCATCCTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGAAAACAGGGGAATTTGCAGACGGTTGTGAAAGAAACAAACTGATGACCTGCGGTGATGAAGTTGGGTTTGCACATCTCAACCAGATGAAGTTGCCAGATACAAAGCATACTTGGGTCAACAAAAGCATGAATCTTGAAGAGTGCAGGCAAAAATGCTTGAGAAATTGCTCATGTATGGCTTATGCAAATACAAATATTAGCGGCAGTGGCAGTGGCAGTGGTTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAACTGATCCCTGATGCAGGACAGGATTTATATGTCAGAATGCTTGCATCAGAACTAGTCATGCATAGGGAAGCACACAAGACTGGAAGATTGAATTCGAAGGTGAAGATTGCTTTGTTTGCAATTTCCGGTTTAGGTTTGGCTATCATCTTCTTCATAGGCGTATACATTTTCAGAAGGAGATCAACCATTAAAGCTGCCACTGATTCCTTAACTGCTCAAGACCCATATCTCAAAGATGGCTTTAGTCTTGTTTCCAGTAATGGAAACTTCGAATTGGGTTTCTTCAGTCCTGGTCTTTCGAGAGATCGTTACTTGGGAATTTGGTTCAAGAATCGGCGAGGTCCAACCTCCGTTTGGGTTGCGAATAGGAACACCCCAATCAATGATTCATCTGGTGTACTGGTGATGAACATTACAACAGGAAATATTACACTTTACAGCCATGATTCCACCGCCATTGTTTGGTCCGCCAGGTTACTGAGAAAAATCCTCAATGGGGTACTCCAATTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGAAAGATGAAAATCCCTTAAACTACTCCTGGCAAAGTTTTGATTACCCTACTGACACTCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAACATTAATAGAAGATTAGACGCTTGGAAGAATCCGAATGACCCATCACCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAATCTGTCATGTGGAAAGGTTCACAAGAATACTTCAGGCATGGCCCATGGAATGGTGTGAGAGTCACTAGTAGACCACTAGGTATTGCACCAATTCTGAACTTCAACTTTGTTTCAAATGAGGATGAAGTTTACTACCAATACTCTGTTCCAAATAAGTCCCATACTGTGATGGTGGTGATGAACCAATCCAATTACTTGCGCATAATGTACTTGTGGTCTGCAACCGAGAGACAGTGGAGACTTTATACTTCGTTGCCAAGAGATTTCTGTGACAATTATGCCCTGTGTGGCCCTTATGGGTATTGTGATATAAGGGTAACCCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGACGGCGGGGGAATTTGCGGACGGTTGTGAACGAAACAAACTGATAAACTGTGGTGATGAAGTTGGGTTTGCACCGCTCAACCAGCTGAAATTGCCAGACACAAAGCGTACTTGGGTCAACAAAAGCATGGATCTTGAAGAGTGCAAACAAAAATGCTTGAGTAATTGCTCTTGTATGGCTTATGCAAATACAAACATCAGTGGGAGTGGAAGTGGCTGTGCCTTGTGGATTGGTGATCTAATCGACTTGAAATTGATTCCGGACGCAGGACAGGATTTATATGTTAAAATGCTAGCATCAGAATTAGTCAAGCGTGGGGAGGCACAAAAAACTGATAGTTTGAAGCCTAAGGTGAAGATTTCTTTGGCTGTGATTGTTCCCAGTTTAGGTTTGGCTATCCTCTTCATAGGCCTATACATTTTCAAAAAGAGATCAACCGTCGAAGGCCTGGCGATTGTGGAAAGAAGGAAATCCAGAGGAATTGATCGACGGCACCATTCGAGAAACGTGCATCATTTCAGAGTTATGGATGTCAACAAACAATCTACAACTGATTCAAGTAAGTCGAAACAATACATGTGGACTAAGATAGAAGATGAGAAATTAGTGGAATGCTTCTTGGAGTTATCTAACATTGGCACATGTTATGCAGATAATGGTACTTTCAAACCAGGATTTCTCAATCACGTAGAGAAATGGATGGCTGAAAAAAATTCTAACTATGAACTTCACACACAGAGTCTAGAGTCTAGAGTTAAGGCTCAACCACCACCTAGAGTGTAG 3261 42.29 MDKVIMYQTYDQCKIIFIHLARDKEEDGGRWRGELKENGREFRFGNHKLMDLHVTNHAIARFDRLTSAAISDSLTAQNPYLRDGLSLVSSNGTFELGFFSPGLPSNRYLGIWYKNRRGPTSVWVANRKTPISGSSGVLVMNITTGNLTLFSHNSTVVVWSARLLRKVPNGVLQLLDTGNLVLRDRDDENPQNYSWQSFDYPSDTLLPGMKLGWDLRYNIERRLEAWNNLNDPSPGDLSWRMELHEYPETVMWKGSRKYVRHGPWNGVRLSSRPLAAAPILNFNFVSNENEVYYQISVVNKSHSVMLVMNQSTYTRILYLWSAAERRWRVYTSLPRDYCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDSWKTGEFADGCERNKLMTCGDEVGFAHLNQMKLPDTKHTWVNKSMNLEECRQKCLRNCSCMAYANTNISGSGSGSGCALWIGDLIDLKLIPDAGQDLYVRMLASELVMHREAHKTGRLNSKVKIALFAISGLGLAIIFFIGVYIFRRRSTIKAATDSLTAQDPYLKDGFSLVSSNGNFELGFFSPGLSRDRYLGIWFKNRRGPTSVWVANRNTPINDSSGVLVMNITTGNITLYSHDSTAIVWSARLLRKILNGVLQLLDTGNLVLRDRKDENPLNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGVRVTSRPLGIAPILNFNFVSNEDEVYYQYSVPNKSHTVMVVMNQSNYLRIMYLWSATERQWRLYTSLPRDFCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDSWTAGEFADGCERNKLINCGDEVGFAPLNQLKLPDTKRTWVNKSMDLEECKQKCLSNCSCMAYANTNISGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLASELVKRGEAQKTDSLKPKVKISLAVIVPSLGLAILFIGLYIFKKRSTVEGLAIVERRKSRGIDRRHHSRNVHHFRVMDVNKQSTTDSSKSKQYMWTKIEDEKLVECFLELSNIGTCYADNGTFKPGFLNHVEKWMAEKNSNYELHTQSLESRVKAQPPPRV* 1087
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20218173 20234959 + Chy6G122650.1 Chy06g01737 229446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01737 1086 SMART ntp_6 844 923 IPR003609 -
Chy06g01737 1086 SMART ntp_6 390 471 IPR003609 -
Chy06g01737 1086 SMART blect_4 532 655 IPR001480 -
Chy06g01737 1086 SMART blect_4 78 201 IPR001480 -
Chy06g01737 1086 Pfam PAN-like domain 844 909 IPR003609 -
Chy06g01737 1086 Pfam PAN-like domain 390 457 IPR003609 -
Chy06g01737 1086 Pfam D-mannose binding lectin 120 226 IPR001480 -
Chy06g01737 1086 Pfam D-mannose binding lectin 574 681 IPR001480 -
Chy06g01737 1086 CDD PAN_AP_plant 841 922 - -
Chy06g01737 1086 CDD B_lectin 534 655 IPR001480 -
Chy06g01737 1086 CDD B_lectin 80 201 IPR001480 -
Chy06g01737 1086 SUPERFAMILY alpha-D-mannose-specific plant lectins 121 232 IPR036426 -
Chy06g01737 1086 Pfam S-locus glycoprotein domain 713 821 IPR000858 GO:0048544
Chy06g01737 1086 Pfam S-locus glycoprotein domain 260 367 IPR000858 GO:0048544
Chy06g01737 1086 ProSiteProfiles PAN/Apple domain profile. 389 472 IPR003609 -
Chy06g01737 1086 ProSiteProfiles PAN/Apple domain profile. 843 924 IPR003609 -
Chy06g01737 1086 CDD PAN_AP_plant 381 470 - -
Chy06g01737 1086 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 523 939 - -
Chy06g01737 1086 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 68 481 - -
Chy06g01737 1086 Gene3D - 519 652 IPR036426 -
Chy06g01737 1086 Gene3D - 67 198 IPR036426 -
Chy06g01737 1086 ProSiteProfiles Bulb-type lectin domain profile. 72 195 IPR001480 -
Chy06g01737 1086 PANTHER - 523 939 - -
Chy06g01737 1086 PANTHER - 68 481 - -
Chy06g01737 1086 SUPERFAMILY alpha-D-mannose-specific plant lectins 575 686 IPR036426 -
Chy06g01737 1086 ProSiteProfiles Bulb-type lectin domain profile. 526 649 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01737 - - - csv:101210952 936.021
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01737 Chy-Chr6:20218173 Chy04g00612 Chy-Chr4:6894298 1.59E-142 dispersed
Chy12g00987 Chy-Chr12:15147800 Chy06g01737 Chy-Chr6:20218173 2.15E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g345 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi11g00714 . . . . . . . . . . . . . . . Chy06g01737 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000044 0 24 5 3 2 9 7 8 11 14 6 9 9 16 11 9 8 16 6 8 18 10 10 8 9 16 4 9 10 13 288
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy06g01737 Chy_Chr06 FPKM 11.584457 10.642052 26.522978 27.690546 2.789691 3.504981 3.358976 0.51865 0.409001 0.413957