Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy06g01769 ATGGCTTCACATTACAAAATCCTCTTCATTTCCATAACTTTTTTCACACTTCTTTCAAACAATGTCTCTGCCAATCCCATCATCAAATGGTGCAAAACGACGCCCCATCCAAAAGTTTGCGTTTCCTTCATGTCCCCAATCAAACCTCCACCACAAAACAGACAGGAGTTTCGACAAATGGCCATTCAAACCACTTTGGAAAAAGCCGCCGAAGCCAAAGCTTACACTGCTCGCTTCGGTCCGACCTGTAAAACCACGCGCCAGAGAACCGCGTGGACTGACTGTTTCAAGCTCTACAACGACGTCGTTCTCCAGTTAAACCGCACACTTCATTGCGTCCATACGGATGAAGCAATCCGCCGACGCAGTTGTACGGATTTCGATGCGCAAACCTGGCTGAGCTCTGCTCTTACTGACATCGATTTATGCAACTCCGGCGCCGCGGATCTCAATGTGACGGATTTTATAGCGCCGATCAAATGCTTGCATGTTTCGAAGATGATTAGTAATTGCTTGGCTATTAATGGTGGATTTTTAGAGGAAGAAGGGGTTAAATATGATGATGGTGGAAATGGGCCGTTTCCGATGTGGGTTTCGGAAGTTGATCGGAAGTTGTTGGAGTCGAGGCCGGGGAGGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCGGGTAAATTTCGGAGGGTTCAGGCGGCGATTGATGCGGCGGCGAGGAGGCGTGGGAGGGGGAGATTTGTAATTTATGTAAAAAGAGGGGTATATAGAGAAAATATTGAAGTTGGAAATGATAATGGGAATATAATGTTGGTGGGAGATGGGATGAGATTTACGGTGATTACAAGTGGAAGAAGTGTCGCCGCCGGTTTCACCACCTTCAGTTCGGCAACCGCTGGTGGCTTTCTCTCTCAGCCTTCTATATTCAGTATCCAAGGTCCAGGATTCATAGCTCGAGACATAAGATTCGTGAACACAGCCGGTCCACGAATGGGCCAAGCAGTGGCACTACGATCATCATCAGACCTATCAGTGTTTCATCGATGTAGCTTCGAAGGCTACCAAGACACACTAATGGTCCTTTCACAAAGGCAATTCTATAAACAATGTTACGTTTACGGTACAATCGACTTCATTTTCGGCAACGCTGCAGTAGTTTTACAGAATTGCATGATTTACGTTAGAAGACCCTTAAAGGGGCAGGTCAATGTGATCACAGCCCAAGGTCGAGAGGACCCATTTCAAAACAGTGGAATATCAATCCACAACTCACAAATACGAGCGGCGGCTGACTTGCGACCCATGGTTGGCTCGGTGAAGACGTACTTGGGTAGGCCATGGAAGAAGTATTCACGGACTATGATAATGAGAAGCTACATTGATTGGTTGGTTAGCCCAGCTGGATGGTTGGCGTGGCAAAGTAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTACCGTAATATTGGACCTAGAGCTTCAACACTGTTTAGAGTTAAATGGCCTGGCTTTCATGTCATTAAAAGCCCAAATGTGGCATCTAAGTTTAGTGTTCAGAGACTTATTGCTGGCCAAACATGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGAGTCTGA 1620 46.85 MASHYKILFISITFFTLLSNNVSANPIIKWCKTTPHPKVCVSFMSPIKPPPQNRQEFRQMAIQTTLEKAAEAKAYTARFGPTCKTTRQRTAWTDCFKLYNDVVLQLNRTLHCVHTDEAIRRRSCTDFDAQTWLSSALTDIDLCNSGAADLNVTDFIAPIKCLHVSKMISNCLAINGGFLEEEGVKYDDGGNGPFPMWVSEVDRKLLESRPGRVRANLVVAKDGSGKFRRVQAAIDAAARRRGRGRFVIYVKRGVYRENIEVGNDNGNIMLVGDGMRFTVITSGRSVAAGFTTFSSATAGGFLSQPSIFSIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYVYGTIDFIFGNAAVVLQNCMIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMVGSVKTYLGRPWKKYSRTMIMRSYIDWLVSPAGWLAWQSSKFAQATLYYGEYRNIGPRASTLFRVKWPGFHVIKSPNVASKFSVQRLIAGQTWLPATGVPFKLGV* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20856795 20859494 - Chy6G122970.1 Chy06g01769 229478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy06g01769 539 Pfam Plant invertase/pectin methylesterase inhibitor 29 174 IPR006501 GO:0004857
Chy06g01769 539 Pfam Pectinesterase 216 524 IPR000070 GO:0030599|GO:0042545
Chy06g01769 539 SUPERFAMILY Pectin lyase-like 214 537 IPR011050 -
Chy06g01769 539 SMART PMEI_2 23 174 IPR006501 GO:0004857
Chy06g01769 539 Gene3D - 211 539 IPR012334 -
Chy06g01769 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 177 IPR035513 -
Chy06g01769 539 PANTHER PECTINESTERASE 7 538 - -
Chy06g01769 539 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 7 538 - -
Chy06g01769 539 CDD PMEI-like_3 30 178 - -
Chy06g01769 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 175 IPR006501 GO:0004857
Chy06g01769 539 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Chy06g01769 539 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Chy06g01769 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 176 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01769 Chy-Chr6:20856795 Chy09g01018 Chy-Chr9:12752095 0 dispersed
Chy06g01769 Chy-Chr6:20856795 Chy09g00837 Chy-Chr9:11150722 8.56E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy06g01769 K01051 - csv:101213944 1019.99